Specific Information of Small Protein : SPROHSA131641
General Information
| Small Protein ID | SPROHSA131641 |
| Organism | Human (Homo sapiens) |
| Small Protein Sequence | ISAAITTEPGPPTQVQGQPP* |
| RNA Sequence | ATCTCCGCCGCTATTACCACTGAACCCGGACCCCCTACCCAGGTCCAGGGCCAGCCGCCATGA |
| Protein Length | 20 |
| Start Codon | ATC |
| Location | chr1:109090813-109090876:+ |
| Blocks | 109090813-109090876 |
| Mean PhyloCSF | -3.20057139404 |
| Data Source | Ribosome profiling; |
| Related Genes | ENSG00000273382; AL356488.3; ENSG00000215717; TMEM167B; NONHSAG002324; |
| Mass (Da) | mono. 1988; avg. 1989.2 |
Ribosome profiling
| Ribo-seq ID | Ensembl Gene ID | Ensembl Transcript ID | Symbol | Gene Type | TIS Type | Ribo P value | TIS P value | Start On Trans | Stop On Trans | In-frame Count | Ribo-seq RPKM |
|---|
| GSE45785_2_alt | ENSG00000215717.6 | ENST00000338272.8 | TMEM167B | Protein_coding | 5'UTR | 0.034548 | None | 1011 | 1074 | 25 | 234.910231 |
| GSE45833_5_alt | ENSG00000215717.6 | ENST00000479160.1 | TMEM167B | Protein_coding | Novel | 0.045809 | None | 34 | 97 | 12 | 73.4154599 |
| GSE45785_2_alt | ENSG00000215717.6 | ENST00000479160.1 | TMEM167B | Protein_coding | Novel | 0.049569 | None | 34 | 97 | 17 | 159.738957 |
| GSE45785_3_alt | ENSG00000215717.6 | ENST00000651489.1 | TMEM167B | Protein_coding | 5'UTR | 0.004637 | None | 41 | 104 | 42 | 281.163217 |
| GSE45785_2_alt | ENSG00000215717.6 | ENST00000651489.1 | TMEM167B | Protein_coding | 5'UTR | 0.034548 | None | 41 | 104 | 25 | 234.910231 |
| SRR5512738_alt | ENSG00000215717.6 | ENST00000473828.1 | TMEM167B | Protein_coding | Novel | 0.006394 | None | 8 | 71 | 25 | 50.3051132 |
| GSE45785_3_alt | ENSG00000215717.6 | ENST00000473828.1 | TMEM167B | Protein_coding | Novel | 0.004637 | None | 8 | 71 | 42 | 281.163217 |
| SRR4045276_alt | ENSG00000215717.6 | ENST00000473828.1 | TMEM167B | Protein_coding | Novel | 0.008833 | None | 8 | 71 | 21 | 78.9470173 |
| GSE45785_2_alt | ENSG00000215717.6 | ENST00000473828.1 | TMEM167B | Protein_coding | Novel | 0.034548 | None | 8 | 71 | 25 | 234.910231 |
| Min Ribo P value | 0.004637 |
| Min TIS P value | None |
| Ribo-seq ID | Cell or Tissue | Phenotype | Ribo-seq Source Details | PMID |
|---|
| GSE45785_2_alt | BJ cells | Immortalized | GSM1115207 | 23594524; |
| GSE45785_3_alt | BJ cells | Immortalized | GSM1115210 | 23594524; |
| GSE45833_5_alt | BJ cells | Senescence | GSM1047590 | 23594524; |
| SRR4045276_alt | Meg01 cells | WT | GSM2285909 | 27681415; |
| SRR5512738_alt | GM19147-Lymphoblastoid Cell Line | WT | GSM2601312 | 29950183; |
Mass Spectrometry Information
Function and Disease
| Functional domain prediction |  |
| Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | T | | | | |
| Disease | Detected |
|---|
| No results |
Related Variants
| Variant ID | Consequence to sORF | rsID | Ribo-seq ID |
|---|
| 1-109090871-C-T | Non-Synonymous p.P20S | . | SRR5239058 |
Related Small Proteins with Different TISs
SmProt