SmProt

Specific Information of Small Protein : SPROHSA320601

General Information

Small Protein ID	SPROHSA320601
Organism	Human (Homo sapiens)
Small Protein Sequence	VKRRAMADPEVQQIMSDPAMRLILEQMQKDPQALSEYVESERRPCWKWRTKAGR*
RNA Sequence	GTGAAGCGACGAGCCATGGCCGACCCTGAGGTGCAGCAGATCATGAGTGACCCAGCCATGCGCCTTATCCTGGAACAGATGCAGAAGGACCCCCAGGCACTCAGCGAGTACGTAGAGTCAGAGAGGCGGCCTTGCTGGAAATGGAGAACAAAAGCAGGCAGATGA
Protein Length	54
Start Codon	GTG
Location	chr11:64203515-64203680:+
Blocks	64203515-64203680
Mean PhyloCSF	2.96849095876
Data Source	Ribosome profiling;
Related Genes	ENSG00000168439; STIP1;
Mass (Da)	mono. 6441.3; avg. 6445.4

Ribosome profiling

Ribo-seq ID	Ensembl Gene ID	Ensembl Transcript ID	Symbol	Gene Type	TIS Type	Ribo P value	TIS P value	Start On Trans	Stop On Trans	In-frame Count	Ribo-seq RPKM
GSE58207_alt	ENSG00000168439.16	ENST00000540887.1	STIP1	Protein_coding	Truncated	1.44E-06	0.040504	249	414	285	177.885800

Min Ribo P value	1.44E-06
Min TIS P value	0.040504

Ribo-seq ID	Cell or Tissue	Phenotype	Ribo-seq Source Details	PMID
GSE58207_alt	HCT116	Colorectal carcinoma	GSM1403307; GSM1403308	25510491;

Database information

No results

Literature information

No results

Mass Spectrometry Information

No results

Function and Disease

Functional domain prediction

Analysis	Signature Accession	Signature Description	Start location	Stop location	Score	Status of the match	InterPro accession	InterPro description
PANTHER	PTHR22904		1	39	2.4E-19	T
Pfam	PF17830	STI1 domain	3	38	9.5E-14	T	IPR041243	STI1 domain
Gene3D	G3DSA:1.10.260.100		1	43	6.4E-14	T
PANTHER	PTHR22904:SF517		1	39	2.4E-19	T

Disease	Detected
No results

Related Variants

Variant ID	Consequence to sORF	rsID	Ribo-seq ID
11-64203623-G-A	Synonymous p.E36E	.	SRR5239056; SRR3680966; SRR3680967; SRR810103; SRR810104
11-64203624-T-C	Non-Synonymous p.Y37H	.	SRR5239056; SRR3680966; SRR3680967; SRR810103; SRR810104

Related Small Proteins with Different TISs

SmProt ID	Small Protein Length	Start Codon	Strand	Blocks
SPROHSA190163	91	ATG	+	64203183-64203228, 64203449-64203680
SPROHSA26998	97	AAG	+	64203165-64203228, 64203449-64203680
SPROHSA142288	98	ATG	+	64203162-64203228, 64203449-64203680