Specific Information of Small Protein : SPROHSA136191
General Information
| Small Protein ID | SPROHSA136191 |
| Organism | Human (Homo sapiens) |
| Small Protein Sequence | MKKRRNNGRTKKGRGHVQPICDTNCAQCVPKDKAINKFIIGNTVEAAAVRDISEASVFDAYVLPKLYLKLHYCLSCAIHSKVVRNRSCEAHKD* |
| RNA Sequence | ATGAAAAAAAGAAGGAACAACGGTCGTACCAAAAAGGGCCGCGGCCACGTGCAGCCTATTTGCGACACGAACTGTGCCCAATGTGTGCCCAAGGACAAGGCTATTAACAAATTCATCATTGGAAACACAGTGGAGGCTGCAGCAGTCAGGGACATTTCTGAAGCGAGCGTCTTTGATGCCTATGTGCTTCCCAAGCTGTATTTGAAGCTACATTACTGTCTGAGTTGTGCAATTCACAGCAAAGTAGTCAGGAATCGATCTTGTGAAGCCCACAAGGACTGA |
| Protein Length | 93 |
| Start Codon | ATG |
| Location | chr9:95123523-95123805:+ |
| Blocks | 95123523-95123805 |
| Mean PhyloCSF | 0 |
| Data Source | Ribosome profiling; |
| Related Genes | ENSG00000158169; FANCC; ENSG00000223849; AL354893.1; NONHSAG052920;NONHSAG101513; |
| Mass (Da) | mono. 10436.4; avg. 10443.1 |
Ribosome profiling
| Ribo-seq ID | Ensembl Gene ID | Ensembl Transcript ID | Symbol | Gene Type | TIS Type | Ribo P value | TIS P value | Start On Trans | Stop On Trans | In-frame Count | Ribo-seq RPKM |
|---|
| GSE94454 | ENSG00000223849.1 | ENST00000433735.1 | AL354893.1 | Processed_pseudogene | Novel | 0.016816 | None | 3 | 285 | 7 | 1.10499933 |
| SRR5350740 | ENSG00000223849.1 | ENST00000433735.1 | AL354893.1 | Processed_pseudogene | Novel | 0.036248 | None | 3 | 285 | 3 | 3.90967279 |
| GSE83493 | ENSG00000223849.1 | ENST00000433735.1 | AL354893.1 | Processed_pseudogene | Novel | 0.046958 | None | 3 | 285 | 19 | 8.07437779 |
| Min Ribo P value | 0.016816 |
| Min TIS P value | None |
| Ribo-seq ID | Cell or Tissue | Phenotype | Ribo-seq Source Details | PMID |
|---|
| GSE83493 | HeLa S3 | Cervical cancer | GSM2204389; GSM2204390; GSM2204391; GSM2204392 | 28460002; |
| GSE94454 | Huh7 | Hepatoma | GSM2476003; GSM2476004; GSM2476005 | 28323820; |
| SRR5350740 | MCF7 | Breast adenocarcinoma | GSM2538884 | 28388414; |
Mass Spectrometry Information
Function and Disease
| Functional domain prediction |  |
| Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
|---|
| No results |
| Disease | Detected |
|---|
| No results |
Related Variants
| Variant ID | Consequence to sORF | rsID | Ribo-seq ID |
|---|
| No results |
Related Small Proteins with Different TISs
SmProt