Small Protein ID | SPROHSA136191 | ||
Organism | human (Homo sapiens) | ||
Small Protein Sequence | MKKRRNNGRTKKGRGHVQPICDTNCAQCVPKDKAINKFIIGNTVEAAAVRDISEASVFDAYVLPKLYLKLHYCLSCAIHSKVVRNRSCEAHKD* | ||
RNA Sequence | ATGAAAAAAAGAAGGAACAACGGTCGTACCAAAAAGGGCCGCGGCCACGTGCAGCCTATTTGCGACACGAACTGTGCCCAATGTGTGCCCAAGGACAAGGCTATTAACAAATTCATCATTGGAAACACAGTGGAGGCTGCAGCAGTCAGGGACATTTCTGAAGCGAGCGTCTTTGATGCCTATGTGCTTCCCAAGCTGTATTTGAAGCTACATTACTGTCTGAGTTGTGCAATTCACAGCAAAGTAGTCAGGAATCGATCTTGTGAAGCCCACAAGGACTGA | ||
Protein Length | 93 | ||
Start Codon | ATG | ||
Location | chr9:95123523-95123805:+ | ||
Blocks | 95123523-95123805 | ||
Mean PhyloCSF | 0 | ||
Data Source | Ribosome profiling; | ||
Related Genes | ENSG00000158169; FANCC; ENSG00000223849; AL354893.1; NONHSAG052920;NONHSAG101513; |
RiboID | GeneID | TransID | Symbol | GeneType | TISType | RiboPvalue | TISPvalue | StartOnTrans | StopOnTrans |
---|---|---|---|---|---|---|---|---|---|
GSE94454 | ENSG00000223849.1 | ENST00000433735.1 | AL354893.1 | processed_pseudogene | Novel | 0.016816 | None | 3 | 285 |
SRR5350740 | ENSG00000223849.1 | ENST00000433735.1 | AL354893.1 | processed_pseudogene | Novel | 0.036248 | None | 3 | 285 |
GSE83493 | ENSG00000223849.1 | ENST00000433735.1 | AL354893.1 | processed_pseudogene | Novel | 0.046958 | None | 3 | 285 |
Min Ribo Pvalue | 0.016816 |
Min TIS Pvalue | None |
No results |
No results |
No results |
Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
---|---|---|---|---|---|---|---|---|---|---|
No results |
Disease | Detected | |
---|---|---|
No results |
VarID | Consequence To sORF | rsID | RiboID |
---|---|---|---|
No results |
ID | Small Protein Length | Start Codon | Strand | Blocks |
---|---|---|---|---|
SPROHSA310089 | 28 | CTG | + | 95123718-95123805 |
SPROHSA338823 | 32 | GTG | + | 95123706-95123805 |
SPROHSA246762 | 42 | ATT | + | 95123676-95123805 |
PMID | 28323820 |
Title | Selective stalling of human translation through small-molecule engagement of the ribosome nascent chain |
Journal | PLoS Biol.2017 Mar 21;15(3):e2001882.doi: 10.1371/journal.pbio.2001882.eCollection 2017 Mar. |
Authors | Nathanael G Lintner,Kim F McClure,Donna Petersen,Allyn T Londregan,David W Piotrowski,Liuqing Wei,Jun Xiao,Michael Bolt,Paula M Loria,Bruce Maguire,Kieran F Geoghegan,Austin Huang,Tim Rolph,Spiros Liras,Jennifer A Doudna,Robert G Dullea,Jamie H D Cate |
PMID | 28388414 |
Title | Transcription Impacts the Efficiency of mRNA Translation via Co-transcriptional N6-adenosine Methylation |
Journal | Cell.2017 Apr 6;169(2):326-337.e12.doi: 10.1016/j.cell.2017.03.031. |
Authors | Boris Slobodin,Ruiqi Han,Vittorio Calderone,Joachim A F Oude Vrielink,Fabricio Loayza-Puch,Ran Elkon,Reuven Agami |
PMID | 28460002 |
Title | Proteomic analysis of polyribosomes identifies splicing factors as potential regulators of translation during mitosis |
Journal | Nucleic Acids Res.2017 Jun 2;45(10):5945-5957.doi: 10.1093/nar/gkx326. |
Authors | Ranen Aviner,Sarah Hofmann,Tamar Elman,Anjana Shenoy,Tamar Geiger,Ran Elkon,Marcelo Ehrlich,Orna Elroy-Stein |