1. NyuWaT2T
  2. Function
  3. xQTL

This page is for browsing eQTL (expression) and sQTL (splicing) results in the NyuWa T2T resource. Utilizing 1,085 RNA-seq datasets from individuals in the 1000 Genomes Project, we conducted population cohort study on expression regulation and splicing regulation of structural variations based on the T2T genome.

Var Type
Variant

QTL Type
Gene
(eg. CHM13_G0049735)

Overlap with GWAS

Items per page
Total page: 1333872  
Total amount: 13338713
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VariantGenexQTLSplice JunctionEffect SizeP-value
1-806227-MEI-SVACHM13_G0000047 ENSG00000186827 TNFRSF4eQTL-1.77532.45e-4
1-981358-MEI-AluCHM13_G0000083 ENSG00000160075 SSU72eQTL-0.23424.93e-8
1-3741372-MEI-AluCHM13_G0000164 ENSG00000235169 SMIM1eQTL-0.28385.07e-5
1-6223874-MEI-AluCHM13_G0000194 ENSG00000131697 NPHP4eQTL-1.16371.85e-4
1-9824847-MEI-AluCHM13_G0000341 ENSG00000171824 EXOSC10eQTL--1.88741.82e-4
1-9858561-MEI-AluCHM13_G0000341 ENSG00000171824 EXOSC10eQTL--1.84273.21e-4
1-10694007-MEI-AluCHM13_G0000341 ENSG00000171824 EXOSC10eQTL--0.56593.85e-6
1-10756059-MEI-AluCHM13_G0000341 ENSG00000171824 EXOSC10eQTL--0.98021.13e-6
1-11314236-MEI-SVACHM13_G0000366 ENSG00000177000 MTHFReQTL-0.7092.54e-54
1-11314236-MEI-SVACHM13_G0000367 ENSG00000011021 CLCN6eQTL-0.23133.15e-18

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