Variant: 1-205242-INS

Allele Count: 233
Allele Number: 20914
Allele Frequency: 0.0111
SVTYPE: INS
START: 205242
END: 205242
SVLEN: 51
Number of Homozygotes: 3
Reference: T2T-CHM13

T2T-specific: not in

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Region annotation
RegionGene IDGene Detail
RefSequpstreamLINC01409;LOC100288069dist=58

Allele frequency distribution
Linkage disequilibrium Plot

LD results for 1-205242-INS

The R2 statistic is the correlation coefficient of genotypes between pairs of loci. D' is the normalized LD statistic by dividing LD statistic D by its theoretical maximum, while D = pAB - pA * pB.

GWAS Catalog
LD SNPLD R2Risk AlleleGeneTrait ClassTraitOR/BetaP-valueStudyAncestry
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Epigenetic markers
MarkerCell typeRange
CTCF22Rv1204789_205902
CTCFRWPE1204925_205801
CTCFRWPE2204788_205894
CTCFepithelial_cell_of_prostate_male204795_205907
CTCFC4-2B204986_205825
CTCFVCaP204866_205896
H3K27acSJCRH30204482_206028
H3K27acRWPE2204549_206091
H3K27acSJSA1204587_205728
H3K27acRWPE1204065_206764
H3K27acVCaP203662_207626
H3K27acHL-60204067_206585
H3K27ac22Rv1204454_207374
H3K27acbrain_microvascular_endothelial_cell204574_205899
H3K27acC4-2B204252_206949
H3K27acepithelial_cell_of_prostate_male204559_206305
H3K27acHAP-1204059_206424
H3K36me3HAP-1203443_205827
H3K36me3MG63204088_214513
H3K4me3SJCRH30204338_206285
H3K4me3HAP-1203951_206720
H3K4me3SJSA1204484_206156
H3K4me3MG63204295_206896
Fixation index Fst
The Fixation index Fst was adopted as the measure for assessing population differences.