Variant: 10-95659789-G-A

Allele Count: 872
Allele Number: 21622
Allele Frequency: 0.0403
Number of Homozygotes: 23
Reference: T2T-CHM13

dbSNP: rs4986893


T2T-specific: not in

Browser:
Region annotation
RegionGene IDGene DetailExonic functionConsequence
RefSeqexonicCYP2C19.stopgainCYP2C19:NM_000769.4:exon4:c.G636A:p.W212X

Allele frequency distribution

Clinical annotation
ClinVar SignificanceClinVar Disease NameClinVar Allele IDTag-value
drug_responseProguanil/_poor_metabolism_of|Mephenytoin/_poor_metabolism_of|not_provided|CYP2C19:_no_function|Acute_coronary_syndrome-MedGen:C1836026|MedGen:C1836024|MedGen:C3661900||Human_Phenotype_Ontology:HP:0033678/MONDO:MONDO:0005542/MeSH:D054058/MedGen:C0948089

GWAS Catalog
Risk AlleleGeneTrait ClassTraitOR/BetaP-valueStudyAncestry
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Pharmacogenomics
Belong to HaplotypeDrugGuideineURLCPIC_LevelPharmGKB_Level_of_EvidencePGx_on_
FDA_Label
CPIC_Publications
_PMID
CYP2C19*3clopidogrelCYP2C19 and Clopidogrel https://cpicpgx.org/guidelines/guideline-for-clopidogrel-and-cyp2c19/A1AActionable PGx21716271;23698643
CYP2C19*3voriconazoleCYP2C19 and Voriconazolehttps://cpicpgx.org/guidelines/guideline-for-voriconazole-and-cyp2c19/A1AActionable PGx27981572
CYP2C19*3sertralineCYP2D6, CYP2C19 and Selective Serotonin Reuptake Inhibitorshttps://cpicpgx.org/guidelines/guideline-for-selective-serotonin-reuptake-inhibitors-and-cyp2d6-and-cyp2c19/B1A-25974703
CYP2C19*3doxepinCYP2D6, CYP2C19 and Tricyclic Antidepressantshttps://cpicpgx.org/guidelines/guideline-for-tricyclic-antidepressants-and-cyp2d6-and-cyp2c19/B3Actionable PGx23486447;27997040

Linkage disequilibrium Plot

LD results for 10-95659789-G-A

Only results with TRVs, MEVs and SVs were reported. The R2 statistic is the correlation coefficient of genotypes between pairs of loci. D' is the normalized LD statistic by dividing LD statistic D by its theoretical maximum, while D = pAB - pA * pB.
Epigenetic signals
MarkerCell typeRange
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Population Branch Statistics

PBS results for 10:95630001-95680000

The population branch statistics (PBS) was calculated based on Fst statistics, and was adopted as the measure for assessing population differences.