This page is for searching Linkage disequilibrium (LD) between SNP/InDels and complex variants in the NyuWa T2T resource. A total of 358,571 structural variations were identified in strong LD with 3,897,296 SNPs.
The R2 statistic is the correlation coefficient of genotypes between pairs of loci. D' is the normalized LD statistic by dividing LD statistic D by its theoretical maximum, while D = pAB - pA * pB.
| Variant | Variant2 | Total R2 | Total D' | AFR R2 | AFR D' | AMR R2 | AMR D' | EAS R2 | EAS D' | EUR R2 | EUR D' | SAS R2 | SAS D' |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2-203515801-DEL | 2-203266067-G-A | 0.83 | 0.93 | - | - | 0.88 | 0.96 | 0.94 | 1.00 | 0.98 | 1.00 | 0.93 | 1.00 |
| 2-203515801-DEL | 2-203266227-G-C | 0.85 | 0.93 | - | - | 0.88 | 0.96 | 0.94 | 1.00 | 0.98 | 1.00 | 0.93 | 1.00 |
| 2-203515801-DEL | 2-203267136-A-G | 0.84 | 0.93 | - | - | 0.88 | 0.96 | 0.94 | 1.00 | 0.98 | 1.00 | 0.93 | 1.00 |
| 2-203515801-DEL | 2-203267724-G-A | 0.84 | 0.93 | - | - | 0.88 | 0.96 | 1.00 | 1.00 | 0.98 | 1.00 | 0.93 | 1.00 |
| 2-203515801-DEL | 2-203267927-A-G | 0.84 | 0.93 | - | - | 0.88 | 0.96 | 1.00 | 1.00 | 0.98 | 1.00 | 0.93 | 1.00 |
| 2-203515801-DEL | 2-203268200-ATTT-A | 0.78 | 0.91 | - | - | 0.88 | 0.96 | 1.00 | 1.00 | 0.98 | 1.00 | 0.93 | 1.00 |
| 2-203515801-DEL | 2-203271266-G-A | 0.85 | 0.93 | - | - | 0.88 | 0.96 | 1.00 | 1.00 | 0.99 | 1.00 | 0.93 | 1.00 |
| 2-203515801-DEL | 2-203271853-CTAT-C | 0.85 | 0.93 | - | - | 0.88 | 0.96 | 1.00 | 1.00 | 0.99 | 1.00 | 0.93 | 1.00 |
| 2-203515801-DEL | 2-203273284-G-A | 0.85 | 0.93 | - | - | 0.88 | 0.96 | 1.00 | 1.00 | 0.99 | 1.00 | 0.93 | 1.00 |
| 2-203515801-DEL | 2-203273576-C-A | 0.85 | 0.93 | - | - | 0.88 | 0.96 | 1.00 | 1.00 | 0.99 | 1.00 | 0.93 | 1.00 |