SmProt

Specific Information of Small Protein : SPROHSA92300

General Information

Small Protein ID	SPROHSA92300
Organism	Human (Homo sapiens)
Small Protein Sequence	RVRGNKGSGTGSSTLEPTSLSEPPVTGLCLPLDGHVDGAAHPASLVATLPG*
RNA Sequence	AGGGTCAGAGGGAATAAAGGCTCAGGGACCGGCAGTTCTACTCTAGAGCCCACCAGCCTCTCAGAGCCTCCGGTGACTGGCCTGTGTCTCCCCCTGGATGGACATGTGGACGGCGCTGCTCATCCTGCAAGCCTTGTTGCTACCCTCCCTGGCTGA
Protein Length	51
Start Codon	AGG
Location	chr19:11577258-11578489:-
Blocks	11577258-11577317,11577592-11577679,11578479-11578489
Mean PhyloCSF	-7.31345511858
Data Source	Ribosome profiling;
Related Genes	ENSG00000198551; ZNF627; ENSG00000102575; ACP5;
Mass (Da)	mono. 4975.5; avg. 4978.5

Ribosome profiling

Ribo-seq ID	Ensembl Gene ID	Ensembl Transcript ID	Symbol	Gene Type	TIS Type	Ribo P value	TIS P value	Start On Trans	Stop On Trans	In-frame Count	Ribo-seq RPKM
GSE45785_5_alt	ENSG00000102575.12	ENST00000649386.1	ACP5	Protein_coding	5'UTR	0.03561	None	248	404	4	26.5628907

Min Ribo P value	0.03561
Min TIS P value	None

Ribo-seq ID	Cell or Tissue	Phenotype	Ribo-seq Source Details	PMID
GSE45785_5_alt	BJ cells	Immortalized	GSM1115216	23594524;

Database information

No results

Literature information

No results

Mass Spectrometry Information

No results

Function and Disease

Functional domain prediction

Analysis	Signature Accession	Signature Description	Start location	Stop location	Score	Status of the match	InterPro accession	InterPro description	GO	Pathways
No results

Disease	Detected
No results

Related Variants

Variant ID	Consequence to sORF	rsID	Ribo-seq ID
19-11577645-T-C	Synonymous p.L15L	rs2071484	SRR5047771; SRR5512738; SRR810104

Related Small Proteins with Different TISs

SmProt ID	Small Protein Length	Start Codon	Strand	Blocks
SPROHSA342233	16	GTG	-	11577258-11577309
SPROHSA155060	52	ATG	-	11577258-11577317, 11577592-11577679, 11578479-11578492
SPROHSA344859	62	GTG	-	11577258-11577317, 11577592-11577679, 11578479-11578522