SmProt

Specific Information of Small Protein : SPROHSA344859

General Information

Small Protein ID	SPROHSA344859
Organism	Human (Homo sapiens)
Small Protein Sequence	VEGLQTAAETMRVRGNKGSGTGSSTLEPTSLSEPPVTGLCLPLDGHVDGAAHPASLVATLPG*
RNA Sequence	GTGGAGGGCCTGCAGACAGCTGCTGAGACTATGAGGGTCAGAGGGAATAAAGGCTCAGGGACCGGCAGTTCTACTCTAGAGCCCACCAGCCTCTCAGAGCCTCCGGTGACTGGCCTGTGTCTCCCCCTGGATGGACATGTGGACGGCGCTGCTCATCCTGCAAGCCTTGTTGCTACCCTCCCTGGCTGA
Protein Length	62
Start Codon	GTG
Location	chr19:11577258-11578522:-
Blocks	11577258-11577317,11577592-11577679,11578479-11578522
Mean PhyloCSF	-7.54513754794
Data Source	Ribosome profiling;
Related Genes	ENSG00000198551; ZNF627; ENSG00000102575; ACP5;
Mass (Da)	mono. 6106.1; avg. 6109.8

Ribosome profiling

Ribo-seq ID	Ensembl Gene ID	Ensembl Transcript ID	Symbol	Gene Type	TIS Type	Ribo P value	TIS P value	Start On Trans	Stop On Trans	In-frame Count	Ribo-seq RPKM
SRR5512738_alt	ENSG00000102575.12	ENST00000649386.1	ACP5	Protein_coding	5'UTR	0.002876	None	215	404	17	11.4024923

Min Ribo P value	0.002876
Min TIS P value	None

Ribo-seq ID	Cell or Tissue	Phenotype	Ribo-seq Source Details	PMID
SRR5512738_alt	GM19147-Lymphoblastoid Cell Line	WT	GSM2601312	29950183;

Database information

No results

Literature information

No results

Mass Spectrometry Information

No results

Function and Disease

Functional domain prediction

Analysis	Signature Accession	Signature Description	Start location	Stop location	Score	Status of the match	InterPro accession	InterPro description	GO	Pathways
MobiDBLite	mobidb-lite	consensus disorder prediction	16	32	-	T
MobiDBLite	mobidb-lite	consensus disorder prediction	1	33	-	T

Disease	Detected
No results

Related Variants

Variant ID	Consequence to sORF	rsID	Ribo-seq ID
19-11577645-T-C	Synonymous p.L26L	rs2071484	SRR5047771; SRR5512738; SRR810104

Related Small Proteins with Different TISs

SmProt ID	Small Protein Length	Start Codon	Strand	Blocks
SPROHSA342233	16	GTG	-	11577258-11577309
SPROHSA92300	51	AGG	-	11577258-11577317, 11577592-11577679, 11578479-11578489
SPROHSA155060	52	ATG	-	11577258-11577317, 11577592-11577679, 11578479-11578492