Specific Information of Small Protein : SPROHSA4970
General Information
Small Protein IDSPROHSA4970
OrganismHuman (Homo sapiens)
Small Protein SequenceKNKTDFMGKLSRCSSLRNLDLRSVCGLYE*
RNA SequenceAAGAATAAGACTGATTTTATGGGAAAATTAAGCAGATGCTCCAGTTTGAGAAACCTGGATCTGCGATCTGTTTGTGGTCTCTATGAATAA
Protein Length29
Start CodonAAG
Locationchr14:58274121-58297957:-
Blocks58274121-58274135,58291634-58291707,58297954-58297957
Mean PhyloCSF-8.54905557103
Data SourceRibosome profiling;
Related GenesENSG00000139971; ARMH4; ENSG00000257621; PSMA3-AS1; ENSG00000180189; HMGB1P14; ENSG00000279636; AL132989.2; ENSG00000252782; RNU6-341P; NONHSAG015097;NONHSAG015108;NONHSAG068810;
Mass (Da)mono. 3332.7; avg. 3334.8
Ribosome profiling
Ribo-seq IDEnsembl Gene IDEnsembl Transcript IDSymbolGene TypeTIS TypeRibo P valueTIS P valueStart On TransStop On TransIn-frame CountRibo-seq RPKM
SRR5350740_altENSG00000257621.8ENST00000555275.5PSMA3-AS1LncRNANovel0.04585None165255728.5840522
SRR5350740_altENSG00000257621.8ENST00000555707.5PSMA3-AS1LncRNANovel0.04585None172262728.5840522
Min Ribo P value0.04585
Min TIS P valueNone
Ribo-seq IDCell or TissuePhenotypeRibo-seq Source DetailsPMID
SRR5350740_altMCF7Breast adenocarcinomaGSM253888428388414;

Database information
No results
Literature information
No results
Mass Spectrometry Information
No results
Function and Disease
Functional domain prediction Funtion   
AnalysisSignature AccessionSignature DescriptionStart locationStop locationScoreStatus of the matchInterPro accessionInterPro descriptionGOPathways
No results
DiseaseDetected
No results
Related Variants
Variant IDConsequence to sORFrsIDRibo-seq ID
No results
Related Small Proteins with Different TISs
SmProt IDSmall Protein LengthStart CodonStrandBlocks
SPROHSA37054914TTG-58274121-58274135, 58291634-58291665
SPROHSA20050423ATG-58274121-58274135, 58291634-58291692