Specific Information of Small Protein : SPROHSA200504
General Information
| Small Protein ID | SPROHSA200504 |
| Organism | Human (Homo sapiens) |
| Small Protein Sequence | MGKLSRCSSLRNLDLRSVCGLYE* |
| RNA Sequence | ATGGGAAAATTAAGCAGATGCTCCAGTTTGAGAAACCTGGATCTGCGATCTGTTTGTGGTCTCTATGAATAA |
| Protein Length | 23 |
| Start Codon | ATG |
| Location | chr14:58274121-58291692:- |
| Blocks | 58274121-58274135,58291634-58291692 |
| Mean PhyloCSF | -8.66159723202 |
| Data Source | Ribosome profiling; Literature; |
| Related Genes | ENSG00000139971; ARMH4; ENSG00000257621; PSMA3-AS1; ENSG00000180189; HMGB1P14; ENSG00000279636; AL132989.2; NONHSAG015097;NONHSAG015108;NONHSAG068810; |
| Mass (Da) | mono. 2599.3; avg. 2601 |
Ribosome profiling
| Ribo-seq ID | Ensembl Gene ID | Ensembl Transcript ID | Symbol | Gene Type | TIS Type | Ribo P value | TIS P value | Start On Trans | Stop On Trans | In-frame Count | Ribo-seq RPKM |
|---|
| SRR5047771 | ENSG00000257621.8 | ENST00000555275.5 | PSMA3-AS1 | LncRNA | Novel | 0.043445 | None | 183 | 255 | 36 | 22.8661021 |
| SRR7207252 | ENSG00000257621.8 | ENST00000555275.5 | PSMA3-AS1 | LncRNA | Novel | 0.030415 | None | 183 | 255 | 17 | 62.4404446 |
| SRR7207252_alt | ENSG00000257621.8 | ENST00000555275.5 | PSMA3-AS1 | LncRNA | Novel | 0.030415 | None | 183 | 255 | 17 | 62.4404446 |
| GSE83493 | ENSG00000257621.8 | ENST00000555275.5 | PSMA3-AS1 | LncRNA | Novel | 0.006776 | None | 183 | 255 | 14 | 23.3023710 |
| GSE83493_alt | ENSG00000257621.8 | ENST00000555275.5 | PSMA3-AS1 | LncRNA | Novel | 0.006776 | None | 183 | 255 | 14 | 23.3023710 |
| SRR5047771 | ENSG00000257621.8 | ENST00000555707.5 | PSMA3-AS1 | LncRNA | Novel | 0.043445 | None | 190 | 262 | 36 | 22.8661021 |
| SRR7207252 | ENSG00000257621.8 | ENST00000555707.5 | PSMA3-AS1 | LncRNA | Novel | 0.030415 | None | 190 | 262 | 17 | 62.4404446 |
| SRR7207252_alt | ENSG00000257621.8 | ENST00000555707.5 | PSMA3-AS1 | LncRNA | Novel | 0.030415 | None | 190 | 262 | 17 | 62.4404446 |
| GSE83493 | ENSG00000257621.8 | ENST00000555707.5 | PSMA3-AS1 | LncRNA | Novel | 0.006776 | None | 190 | 262 | 14 | 23.3023710 |
| GSE83493_alt | ENSG00000257621.8 | ENST00000555707.5 | PSMA3-AS1 | LncRNA | Novel | 0.006776 | None | 190 | 262 | 14 | 23.3023710 |
| SRR5047771 | ENSG00000257621.8 | ENST00000553657.5 | PSMA3-AS1 | LncRNA | Novel | 0.043445 | None | 218 | 290 | 36 | 22.8661021 |
| SRR7207252 | ENSG00000257621.8 | ENST00000553657.5 | PSMA3-AS1 | LncRNA | Novel | 0.030415 | None | 218 | 290 | 17 | 62.4404446 |
| SRR7207252_alt | ENSG00000257621.8 | ENST00000553657.5 | PSMA3-AS1 | LncRNA | Novel | 0.030415 | None | 218 | 290 | 17 | 62.4404446 |
| GSE83493 | ENSG00000257621.8 | ENST00000553657.5 | PSMA3-AS1 | LncRNA | Novel | 0.006776 | None | 218 | 290 | 14 | 23.3023710 |
| GSE83493_alt | ENSG00000257621.8 | ENST00000553657.5 | PSMA3-AS1 | LncRNA | Novel | 0.006776 | None | 218 | 290 | 14 | 23.3023710 |
| Min Ribo P value | 0.006776 |
| Min TIS P value | None |
| Ribo-seq ID | Cell or Tissue | Phenotype | Ribo-seq Source Details | PMID |
|---|
| GSE83493 | HeLa S3 | Cervical cancer | GSM2204389; GSM2204390; GSM2204391; GSM2204392 | 28460002; |
| GSE83493_alt | HeLa S3 | Cervical cancer | GSM2204389; GSM2204390; GSM2204391; GSM2204392 | 28460002; |
| SRR5047771 | iPSC-differentiated dopamine neurons | Parkinson Disease | NA | NA; |
| SRR7207252 | MCF10A-ER-Src | Breast adenocarcinoma | GSM3150265 | 30089253; |
| SRR7207252_alt | MCF10A-ER-Src | Breast adenocarcinoma | GSM3150265 | 30089253; |
Literature information
| PMID | 31155234; |
| Cell lines Or Tissues | left ventricle |
| Phenotype | WT |
| Gene ID | ENSG00000257621 |
| Transcript ID | ENST00000555707 |
| Symbol | NA |
| ORF Type | sORF |
| Gene Type | antisense |
| Throughput | High-throughput Literature Mining |
| Interaction | NA |
| Function Description | NA |
| PMID | 26687005; |
| Cell lines Or Tissues | BJ |
| Phenotype | NULL |
| Gene ID | ENSG00000257621 |
| Transcript ID | ENST00000557660 |
| Symbol | RP11-349A22.5 |
| ORF Type | sORF |
| Gene Type | Antisense |
| Throughput | High-throughput Literature Mining |
| Interaction | NA |
| Function Description | NA |
Mass Spectrometry Information
Function and Disease
| Functional domain prediction |  |
| Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
|---|
| No results |
| Disease | Detected |
|---|
| No results |
Related Variants
| Variant ID | Consequence to sORF | rsID | Ribo-seq ID |
|---|
| No results |
Related Small Proteins with Different TISs
| SmProt ID | Small Protein Length | Start Codon | Strand | Blocks |
|---|
| SPROHSA370549 | 14 | TTG | - | 58274121-58274135, 58291634-58291665 |
| SPROHSA4970 | 29 | AAG | - | 58274121-58274135, 58291634-58291707, 58297954-58297957 |
SmProt