Specific Information of Small Protein : SPROHSA370549
General Information
Small Protein ID | SPROHSA370549 |
Organism | Human (Homo sapiens) |
Small Protein Sequence | LRNLDLRSVCGLYE* |
RNA Sequence | TTGAGAAACCTGGATCTGCGATCTGTTTGTGGTCTCTATGAATAA |
Protein Length | 14 |
Start Codon | TTG |
Location | chr14:58274121-58291665:- |
Blocks | 58274121-58274135,58291634-58291665 |
Mean PhyloCSF | -8.6119111485 |
Data Source | Ribosome profiling; |
Related Genes | ENSG00000139971; ARMH4; ENSG00000257621; PSMA3-AS1; ENSG00000180189; HMGB1P14; ENSG00000279636; AL132989.2; NONHSAG015097;NONHSAG015108;NONHSAG068810; |
Mass (Da) | mono. 1649.9; avg. 1650.9 |
Ribosome profiling
Ribo-seq ID | Ensembl Gene ID | Ensembl Transcript ID | Symbol | Gene Type | TIS Type | Ribo P value | TIS P value | Start On Trans | Stop On Trans | In-frame Count | Ribo-seq RPKM |
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GSE105082_alt | ENSG00000257621.8 | ENST00000555275.5 | PSMA3-AS1 | LncRNA | Novel | 0.032065 | None | 210 | 255 | 3 | 4.53032182 |
SRR5047770_alt | ENSG00000257621.8 | ENST00000555275.5 | PSMA3-AS1 | LncRNA | Novel | 0.037574 | None | 210 | 255 | 12 | 21.1573851 |
GSE105082_alt | ENSG00000257621.8 | ENST00000555707.5 | PSMA3-AS1 | LncRNA | Novel | 0.032065 | None | 217 | 262 | 3 | 4.53032182 |
SRR5047770_alt | ENSG00000257621.8 | ENST00000555707.5 | PSMA3-AS1 | LncRNA | Novel | 0.037574 | None | 217 | 262 | 12 | 21.1573851 |
GSE105082_alt | ENSG00000257621.8 | ENST00000553657.5 | PSMA3-AS1 | LncRNA | Novel | 0.032065 | None | 245 | 290 | 3 | 4.53032182 |
SRR5047770_alt | ENSG00000257621.8 | ENST00000553657.5 | PSMA3-AS1 | LncRNA | Novel | 0.037574 | None | 245 | 290 | 12 | 21.1573851 |
Min Ribo P value | 0.032065 |
Min TIS P value | None |
Ribo-seq ID | Cell or Tissue | Phenotype | Ribo-seq Source Details | PMID |
---|
GSE105082_alt | HELA | Cervical cancer | GSM2817679; GSM2817680 | 30591072; |
SRR5047770_alt | iPSC-differentiated dopamine neurons | Parkinson Disease | GSM2402496; GSM2402497; GSM2402498 | NA; |
Mass Spectrometry Information
Function and Disease
Functional domain prediction |      |
Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
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No results |
Disease | Detected |
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No results |
Related Variants
Variant ID | Consequence to sORF | rsID | Ribo-seq ID |
---|
No results |
Related Small Proteins with Different TISs
SmProt ID | Small Protein Length | Start Codon | Strand | Blocks |
---|
SPROHSA200504 | 23 | ATG | - | 58274121-58274135, 58291634-58291692 |
SPROHSA4970 | 29 | AAG | - | 58274121-58274135, 58291634-58291707, 58297954-58297957 |