Specific Information of Small Protein : SPROHSA45320
General Information
| Small Protein ID | SPROHSA45320 |
| Organism | Human (Homo sapiens) |
| Small Protein Sequence | TTKPASRWSATTWPRTSCASGRNCRRRCFRERKPKTPCNLSDRMLTMRLWHVLTLNAKWNLCKKRLPF* |
| RNA Sequence | ACGACAAAGCCCGCGTCGAGGTGGAGCGCGACAACCTGGCCGAGGACATCATGCGCCTCCGGGAGAAATTGCAGGAGGAGATGCTTCAGAGAGAGGAAGCCGAAAACACCCTGCAATCTTTCAGACAGGATGTTGACAATGCGTCTCTGGCACGTCTTGACCTTGAACGCAAAGTGGAATCTTTGCAAGAAGAGATTGCCTTTTTGA |
| Protein Length | 68 |
| Start Codon | ACG |
| Location | chr10:17229918-17233665:+ |
| Blocks | 17229918-17229985,17230649-17230710,17233586-17233665 |
| Mean PhyloCSF | -6.93946857959 |
| Data Source | Ribosome profiling; |
| Related Genes | ENSG00000229124; VIM-AS1; ENSG00000026025; VIM; ENSG00000234961; AL133415.1; NONHSAG005321;NONHSAG005322;NONHSAG005323; |
| Mass (Da) | mono. 8117.2; avg. 8122.5 |
Ribosome profiling
| Ribo-seq ID | Ensembl Gene ID | Ensembl Transcript ID | Symbol | Gene Type | TIS Type | Ribo P value | TIS P value | Start On Trans | Stop On Trans | In-frame Count | Ribo-seq RPKM |
|---|
| GSE45785_2_alt | ENSG00000026025.16 | ENST00000224237.9 | VIM | Protein_coding | Internal | 0.02652 | None | 641 | 848 | 2188 | 6257.19148 |
| GSE45785_5_alt | ENSG00000026025.16 | ENST00000224237.9 | VIM | Protein_coding | Internal | 0.029401 | None | 641 | 848 | 798 | 3993.67288 |
| GSE45785_4_alt | ENSG00000026025.16 | ENST00000224237.9 | VIM | Protein_coding | Internal | 0.038082 | None | 641 | 848 | 1493 | 4600.08775 |
| GSE45785_2_alt | ENSG00000026025.16 | ENST00000487938.5 | VIM | Protein_coding | Internal | 0.02652 | None | 641 | 848 | 2188 | 6257.19148 |
| GSE45785_5_alt | ENSG00000026025.16 | ENST00000487938.5 | VIM | Protein_coding | Internal | 0.029401 | None | 641 | 848 | 798 | 3993.67288 |
| GSE45785_4_alt | ENSG00000026025.16 | ENST00000487938.5 | VIM | Protein_coding | Internal | 0.038082 | None | 641 | 848 | 1493 | 4600.08775 |
| GSE45785_2_alt | ENSG00000026025.16 | ENST00000544301.7 | VIM | Protein_coding | Internal | 0.02652 | None | 927 | 1134 | 2188 | 6257.19148 |
| GSE45785_5_alt | ENSG00000026025.16 | ENST00000544301.7 | VIM | Protein_coding | Internal | 0.029401 | None | 927 | 1134 | 798 | 3993.67288 |
| GSE45785_4_alt | ENSG00000026025.16 | ENST00000544301.7 | VIM | Protein_coding | Internal | 0.038082 | None | 927 | 1134 | 1493 | 4600.08775 |
| Min Ribo P value | 0.02652 |
| Min TIS P value | None |
| Ribo-seq ID | Cell or Tissue | Phenotype | Ribo-seq Source Details | PMID |
|---|
| GSE45785_2_alt | BJ cells | Immortalized | GSM1115207 | 23594524; |
| GSE45785_4_alt | BJ cells | Immortalized | GSM1115213 | 23594524; |
| GSE45785_5_alt | BJ cells | Immortalized | GSM1115216 | 23594524; |
Mass Spectrometry Information
Function and Disease
| Functional domain prediction |  |
| Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
|---|
| No results |
| Disease | Detected |
|---|
| No results |
Related Variants
| Variant ID | Consequence to sORF | rsID | Ribo-seq ID |
|---|
| 10-17233617-G-A | Synonymous p.L53L | . | SRR5239051 |
Related Small Proteins with Different TISs
SmProt