Specific Information of Small Protein : SPROHSA369346
General Information
Small Protein IDSPROHSA369346
OrganismHuman (Homo sapiens)
Small Protein SequenceLTMRLWHVLTLNAKWNLCKKRLPF*
RNA SequenceTTGACAATGCGTCTCTGGCACGTCTTGACCTTGAACGCAAAGTGGAATCTTTGCAAGAAGAGATTGCCTTTTTGA
Protein Length24
Start CodonTTG
Locationchr10:17233590-17233665:+
Blocks17233590-17233665
Mean PhyloCSF-7.89559997559
Data SourceRibosome profiling;
Related GenesENSG00000026025; VIM; ENSG00000234961; AL133415.1; NONHSAG005322;NONHSAG005323;
Mass (Da)mono. 2980.7; avg. 2982.7
Ribosome profiling
Ribo-seq IDEnsembl Gene IDEnsembl Transcript IDSymbolGene TypeTIS TypeRibo P valueTIS P valueStart On TransStop On TransIn-frame CountRibo-seq RPKM
SRR5350744_altENSG00000026025.16ENST00000495528.1VIMProtein_codingNovel0.039886None366441841.5084804
Min Ribo P value0.039886
Min TIS P valueNone
Ribo-seq IDCell or TissuePhenotypeRibo-seq Source DetailsPMID
SRR5350744_altPC9NSCLCGSM253890328388414;

Database information
No results
Literature information
No results
Mass Spectrometry Information
No results
Function and Disease
Functional domain prediction Funtion   
AnalysisSignature AccessionSignature DescriptionStart locationStop locationScoreStatus of the matchInterPro accessionInterPro descriptionGOPathways
No results
DiseaseDetected
No results
Related Variants
Variant IDConsequence to sORFrsIDRibo-seq ID
10-17233617-G-ASynonymous p.L9L.SRR5239051
Related Small Proteins with Different TISs
SmProt IDSmall Protein LengthStart CodonStrandBlocks
SPROHSA22396725ATG+17233587-17233665
SPROHSA4532068ACG+17229918-17229985, 17230649-17230710, 17233586-17233665