Specific Information of Small Protein : SPROHSA392731
General Information
| Small Protein ID | SPROHSA392731 |
| Organism | Human (Homo sapiens) |
| Small Protein Sequence | LLAAGLAGELDLEAHPGRTCGAEEGVGVSGVGCSGKEGALLSRSVGDSFEDASSSRLPFYLSARESPWSLFKFWRLSLWVGLITCY* |
| RNA Sequence | TTGTTGGCAGCAGGACTAGCTGGAGAGCTAGACCTGGAAGCGCATCCGGGGAGGACTTGCGGGGCAGAGGAGGGCGTGGGCGTGTCTGGTGTGGGATGCAGTGGAAAGGAGGGGGCCCTCCTGAGTAGATCTGTGGGTGATTCCTTCGAGGACGCCTCGTCTTCCCGTCTGCCCTTTTATTTGTCAGCGAGGGAGTCCCCATGGTCTCTGTTCAAGTTCTGGAGACTTTCTCTTTGGGTGGGCTTAATCACCTGCTACTAA |
| Protein Length | 86 |
| Start Codon | TTG |
| Location | chr1:117121253-117121514:- |
| Blocks | 117121253-117121514 |
| Mean PhyloCSF | -6.54201516911 |
| Data Source | Ribosome profiling; |
| Related Genes | ENSG00000134253; TRIM45; NONHSAG056777; |
| Mass (Da) | mono. 9090.5; avg. 9096.2 |
Ribosome profiling
| Ribo-seq ID | Ensembl Gene ID | Ensembl Transcript ID | Symbol | Gene Type | TIS Type | Ribo P value | TIS P value | Start On Trans | Stop On Trans | In-frame Count | Ribo-seq RPKM |
|---|
| SRR964946_alt | ENSG00000134253.10 | ENST00000256649.9 | TRIM45 | Protein_coding | 5'UTR | 0.043686 | 0.007775 | 235 | 496 | NA | NA |
| SRR964946_alt | ENSG00000134253.10 | ENST00000369464.7 | TRIM45 | Protein_coding | 5'UTR | 0.043686 | 0.007775 | 248 | 509 | NA | NA |
| Min Ribo P value | 0.043686 |
| Min TIS P value | 0.007775 |
| Ribo-seq ID | Cell or Tissue | Phenotype | Ribo-seq Source Details | PMID |
|---|
| SRR964946_alt | HEK293 | WT | SRR964946 | 22927429; |
Mass Spectrometry Information
Function and Disease
| Functional domain prediction |  |
| Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
|---|
| No results |
| Disease | Detected |
|---|
| No results |
Related Variants
| Variant ID | Consequence to sORF | rsID | Ribo-seq ID |
|---|
| No results |
Related Small Proteins with Different TISs
SmProt