Specific Information of Small Protein : SPROHSA324578
General Information
Small Protein IDSPROHSA324578
OrganismHuman (Homo sapiens)
Small Protein SequenceVTLLAAGLAGELDLEAHPGRTCGAEEGVGVSGVGCSGKEGALLSRSVGDSFEDASSSRLPFYLSARESPWSLFKFWRLSLWVGLITCY*
RNA SequenceGTGACTTTGTTGGCAGCAGGACTAGCTGGAGAGCTAGACCTGGAAGCGCATCCGGGGAGGACTTGCGGGGCAGAGGAGGGCGTGGGCGTGTCTGGTGTGGGATGCAGTGGAAAGGAGGGGGCCCTCCTGAGTAGATCTGTGGGTGATTCCTTCGAGGACGCCTCGTCTTCCCGTCTGCCCTTTTATTTGTCAGCGAGGGAGTCCCCATGGTCTCTGTTCAAGTTCTGGAGACTTTCTCTTTGGGTGGGCTTAATCACCTGCTACTAA
Protein Length88
Start CodonGTG
Locationchr1:117121253-117121520:-
Blocks117121253-117121520
Mean PhyloCSF-6.56136579584
Data SourceRibosome profiling;
Related GenesENSG00000134253; TRIM45; NONHSAG056777;
Mass (Da)mono. 9290.6; avg. 9296.4
Ribosome profiling
Ribo-seq IDEnsembl Gene IDEnsembl Transcript IDSymbolGene TypeTIS TypeRibo P valueTIS P valueStart On TransStop On TransIn-frame CountRibo-seq RPKM
SRR964946_altENSG00000134253.10ENST00000256649.9TRIM45Protein_coding5'UTR0.016760.007775229496NANA
SRR964946_altENSG00000134253.10ENST00000369464.7TRIM45Protein_coding5'UTR0.016760.007775242509NANA
Min Ribo P value0.01676
Min TIS P value0.007775
Ribo-seq IDCell or TissuePhenotypeRibo-seq Source DetailsPMID
SRR964946_altHEK293WTSRR96494622927429;

Database information
No results
Literature information
No results
Mass Spectrometry Information
No results
Function and Disease
Functional domain prediction Funtion   
AnalysisSignature AccessionSignature DescriptionStart locationStop locationScoreStatus of the matchInterPro accessionInterPro descriptionGOPathways
No results
DiseaseDetected
No results
Related Variants
Variant IDConsequence to sORFrsIDRibo-seq ID
No results
Related Small Proteins with Different TISs
SmProt IDSmall Protein LengthStart CodonStrandBlocks
SPROHSA38979226TTG-117121253-117121334
SPROHSA6837369AGG-117121253-117121463
SPROHSA39273186TTG-117121253-117121514