Specific Information of Small Protein : SPROHSA385556
General Information
| Small Protein ID | SPROHSA385556 |
| Organism | Human (Homo sapiens) |
| Small Protein Sequence | LGIFGAPSLFAAGVYHPRPSPLPVSVMACPEDSQIHPSNRLHCRRQSGFILYSPCRLPSS* |
| RNA Sequence | TTGGGAATCTTCGGTGCGCCAAGTCTGTTCGCCGCCGGGGTCTATCACCCCCGCCCCTCGCCTCTGCCCGTGAGCGTAATGGCCTGTCCAGAAGACAGCCAAATACATCCTTCAAACAGACTTCACTGCAGGAGACAGAGTGGATTCATCCTGTATTCTCCATGTAGACTTCCATCTTCATGA |
| Protein Length | 60 |
| Start Codon | TTG |
| Location | chr10:95876554-95907854:- |
| Blocks | 95876554-95876660,95907777-95907854 |
| Mean PhyloCSF | -8.5164754065 |
| Data Source | Ribosome profiling; |
| Related Genes | ENSG00000138185; ENTPD1; ENSG00000226688; ENTPD1-AS1; ENSG00000188649; CC2D2B; ENSG00000270099; AL365273.2; NONHSAG061460;NONHSAG006591; |
| Mass (Da) | mono. 6515.3; avg. 6519.5 |
Ribosome profiling
| Min Ribo P value | 0.005429 |
| Min TIS P value | None |
| Ribo-seq ID | Cell or Tissue | Phenotype | Ribo-seq Source Details | PMID |
|---|
| SRR7207252_alt | MCF10A-ER-Src | Breast adenocarcinoma | GSM3150265 | 30089253; |
Mass Spectrometry Information
Function and Disease
| Functional domain prediction |  |
| Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
|---|
| No results |
| Disease | Detected |
|---|
| No results |
Related Variants
| Variant ID | Consequence to sORF | rsID | Ribo-seq ID |
|---|
| 10-95907825-G-T | Non-Synonymous p.F10L | rs41291578 | SRR1795427; SRR964946; SRR618772; SRR618771; SRR618773 |
Related Small Proteins with Different TISs
SmProt