Specific Information of Small Protein : SPROHSA135186
General Information
| Small Protein ID | SPROHSA135186 |
| Organism | Human (Homo sapiens) |
| Small Protein Sequence | IFGAPSLFAAGVYHPRPSPLPVSVMACPEDSQIHPSNRLHCRRQSGFILYSPCRLPSS* |
| RNA Sequence | ATCTTCGGTGCGCCAAGTCTGTTCGCCGCCGGGGTCTATCACCCCCGCCCCTCGCCTCTGCCCGTGAGCGTAATGGCCTGTCCAGAAGACAGCCAAATACATCCTTCAAACAGACTTCACTGCAGGAGACAGAGTGGATTCATCCTGTATTCTCCATGTAGACTTCCATCTTCATGA |
| Protein Length | 58 |
| Start Codon | ATC |
| Location | chr10:95876554-95907848:- |
| Blocks | 95876554-95876660,95907777-95907848 |
| Mean PhyloCSF | -8.48335593703 |
| Data Source | Ribosome profiling; |
| Related Genes | ENSG00000138185; ENTPD1; ENSG00000226688; ENTPD1-AS1; ENSG00000188649; CC2D2B; ENSG00000270099; AL365273.2; NONHSAG061460;NONHSAG006591; |
| Mass (Da) | mono. 6345.2; avg. 6349.3 |
Ribosome profiling
| Min Ribo P value | 0.006172 |
| Min TIS P value | 0.040878 |
| Ribo-seq ID | Cell or Tissue | Phenotype | Ribo-seq Source Details | PMID |
|---|
| GSE58207_alt | HCT116 | Colorectal carcinoma | GSM1403307; GSM1403308 | 25510491; |
Mass Spectrometry Information
Function and Disease
| Functional domain prediction |  |
| Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
|---|
| No results |
| Disease | Detected |
|---|
| No results |
Related Variants
| Variant ID | Consequence to sORF | rsID | Ribo-seq ID |
|---|
| 10-95907825-G-T | Non-Synonymous p.F8L | rs41291578 | SRR1795427; SRR964946; SRR618772; SRR618771; SRR618773 |
Related Small Proteins with Different TISs
SmProt