Specific Information of Small Protein : SPROHSA316862
General Information
| Small Protein ID | SPROHSA316862 |
| Organism | Human (Homo sapiens) |
| Small Protein Sequence | LFAAGVYHPRPSPLPVSVMACPEDSQIHPSNRLHCRRQSGFILYSPCRLPSS* |
| RNA Sequence | CTGTTCGCCGCCGGGGTCTATCACCCCCGCCCCTCGCCTCTGCCCGTGAGCGTAATGGCCTGTCCAGAAGACAGCCAAATACATCCTTCAAACAGACTTCACTGCAGGAGACAGAGTGGATTCATCCTGTATTCTCCATGTAGACTTCCATCTTCATGA |
| Protein Length | 52 |
| Start Codon | CTG |
| Location | chr10:95876554-95907830:- |
| Blocks | 95876554-95876660,95907777-95907830 |
| Mean PhyloCSF | -8.479918258 |
| Data Source | Ribosome profiling; |
| Related Genes | ENSG00000138185; ENTPD1; ENSG00000226688; ENTPD1-AS1; ENSG00000188649; CC2D2B; ENSG00000270099; AL365273.2; NONHSAG061460;NONHSAG006591; |
| Mass (Da) | mono. 5772.9; avg. 5776.6 |
Ribosome profiling
| Ribo-seq ID | Ensembl Gene ID | Ensembl Transcript ID | Symbol | Gene Type | TIS Type | Ribo P value | TIS P value | Start On Trans | Stop On Trans | In-frame Count | Ribo-seq RPKM |
|---|
| SRR5512738_alt | ENSG00000226688.7 | ENST00000667309.1 | ENTPD1-AS1 | LncRNA | Novel | 0.003611 | None | 348 | 507 | 14 | 11.1620402 |
| GSE103308_alt | ENSG00000226688.7 | ENST00000667309.1 | ENTPD1-AS1 | LncRNA | Novel | 0.00131 | None | 348 | 507 | 12 | 6.71330663 |
| GSE105082_alt | ENSG00000226688.7 | ENST00000667309.1 | ENTPD1-AS1 | LncRNA | Novel | 0.003611 | None | 348 | 507 | 12 | 5.12866622 |
| GSE58207_alt | ENSG00000226688.7 | ENST00000667309.1 | ENTPD1-AS1 | LncRNA | Novel | 0.019233 | 0.000162 | 348 | 507 | 8 | 5.18171151 |
| SRR618770,618771,618772,618773_alt | ENSG00000226688.7 | ENST00000667309.1 | ENTPD1-AS1 | LncRNA | Novel | 2.553E-05 | 0.000291 | 348 | 507 | 22 | 23.3583824 |
| Min Ribo P value | 2.553E-05 |
| Min TIS P value | None |
| Ribo-seq ID | Cell or Tissue | Phenotype | Ribo-seq Source Details | PMID |
|---|
| GSE103308_alt | RD-muscle | WT | GSM2760247 | 29696588; |
| GSE105082_alt | HELA | Cervical cancer | GSM2817679; GSM2817680 | 30591072; |
| GSE58207_alt | HCT116 | Colorectal carcinoma | GSM1403307; GSM1403308 | 25510491; |
| SRR5512738_alt | GM19147-Lymphoblastoid Cell Line | WT | GSM2601312 | 29950183; |
| SRR618770,618771,618772,618773_alt | HEK293 | WT | SRR618770; SRR618771; SRR618772; SRR618773 | NA; |
Mass Spectrometry Information
Function and Disease
| Functional domain prediction |  |
| Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
|---|
| No results |
| Disease | Detected |
|---|
| No results |
Related Variants
| Variant ID | Consequence to sORF | rsID | Ribo-seq ID |
|---|
| 10-95907825-G-T | Non-Synonymous p.F2L | rs41291578 | SRR1795427; SRR964946; SRR618772; SRR618771; SRR618773 |
Related Small Proteins with Different TISs
SmProt