Specific Information of Small Protein : SPROHSA370548
General Information
| Small Protein ID | SPROHSA370548 |
| Organism | Human (Homo sapiens) |
| Small Protein Sequence | LRNLDLRSVCGTSIKMIYGNKVLSLCLK* |
| RNA Sequence | TTGAGAAACCTGGATCTGCGATCTGTTTGTGGTACCAGCATCAAGATGATTTATGGTAATAAGGTACTCAGTCTTTGCTTAAAATAA |
| Protein Length | 28 |
| Start Codon | TTG |
| Location | chr14:58273954-58291665:- |
| Blocks | 58273954-58274010,58291634-58291665 |
| Mean PhyloCSF | -8.03805752184 |
| Data Source | Ribosome profiling; |
| Related Genes | ENSG00000139971; ARMH4; ENSG00000257621; PSMA3-AS1; ENSG00000180189; HMGB1P14; ENSG00000279636; AL132989.2; NONHSAG015097;NONHSAG015108;NONHSAG068810; |
| Mass (Da) | mono. 3136.7; avg. 3138.8 |
Ribosome profiling
| Ribo-seq ID | Ensembl Gene ID | Ensembl Transcript ID | Symbol | Gene Type | TIS Type | Ribo P value | TIS P value | Start On Trans | Stop On Trans | In-frame Count | Ribo-seq RPKM |
|---|
| GSE105082_alt | ENSG00000257621.8 | ENST00000556400.5 | PSMA3-AS1 | LncRNA | Novel | 0.005395 | None | 203 | 290 | 9 | 7.02980973 |
| SRR5047770_alt | ENSG00000257621.8 | ENST00000556400.5 | PSMA3-AS1 | LncRNA | Novel | 0.019863 | None | 203 | 290 | 16 | 14.5913000 |
| GSE105082_alt | ENSG00000257621.8 | ENST00000557660.5 | PSMA3-AS1 | LncRNA | Novel | 0.005395 | None | 2254 | 2341 | 9 | 7.02980973 |
| SRR5047770_alt | ENSG00000257621.8 | ENST00000557660.5 | PSMA3-AS1 | LncRNA | Novel | 0.019863 | None | 2254 | 2341 | 16 | 14.5913000 |
| Min Ribo P value | 0.005395 |
| Min TIS P value | None |
| Ribo-seq ID | Cell or Tissue | Phenotype | Ribo-seq Source Details | PMID |
|---|
| GSE105082_alt | HELA | Cervical cancer | GSM2817679; GSM2817680 | 30591072; |
| SRR5047770_alt | iPSC-differentiated dopamine neurons | Parkinson Disease | GSM2402496; GSM2402497; GSM2402498 | NA; |
Mass Spectrometry Information
Function and Disease
| Functional domain prediction |  |
| Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
|---|
| No results |
| Disease | Detected |
|---|
| No results |
Related Variants
| Variant ID | Consequence to sORF | rsID | Ribo-seq ID |
|---|
| No results |
Related Small Proteins with Different TISs
| SmProt ID | Small Protein Length | Start Codon | Strand | Blocks |
|---|
| SPROHSA160279 | 13 | ATG | - | 58273954-58273996 |
| SPROHSA200503 | 37 | ATG | - | 58273954-58274010, 58291634-58291692 |
| SPROHSA4969 | 43 | AAG | - | 58273954-58274010, 58291634-58291707, 58297954-58297957 |
SmProt