Specific Information of Small Protein : SPROHSA160279
General Information
| Small Protein ID | SPROHSA160279 |
| Organism | Human (Homo sapiens) |
| Small Protein Sequence | MIYGNKVLSLCLK* |
| RNA Sequence | ATGATTTATGGTAATAAGGTACTCAGTCTTTGCTTAAAATAA |
| Protein Length | 13 |
| Start Codon | ATG |
| Location | chr14:58273954-58273996:- |
| Blocks | 58273954-58273996 |
| Mean PhyloCSF | -7.77104768299 |
| Data Source | Ribosome profiling; |
| Related Genes | ENSG00000139971; ARMH4; ENSG00000257621; PSMA3-AS1; NONHSAG015097; |
| Mass (Da) | mono. 1480.8; avg. 1481.9 |
Ribosome profiling
| Ribo-seq ID | Ensembl Gene ID | Ensembl Transcript ID | Symbol | Gene Type | TIS Type | Ribo P value | TIS P value | Start On Trans | Stop On Trans | In-frame Count | Ribo-seq RPKM |
|---|
| SRR2991181 | ENSG00000257621.8 | ENST00000556225.1 | PSMA3-AS1 | LncRNA | Novel | 0.031707 | None | 118 | 160 | 11 | 42.8077520 |
| SRR2991181_alt | ENSG00000257621.8 | ENST00000556225.1 | PSMA3-AS1 | LncRNA | Novel | 0.031707 | None | 118 | 160 | 11 | 42.8077520 |
| SRR2991181 | ENSG00000257621.8 | ENST00000557660.5 | PSMA3-AS1 | LncRNA | Novel | 0.031707 | None | 2299 | 2341 | 11 | 42.8077520 |
| SRR2991181_alt | ENSG00000257621.8 | ENST00000557660.5 | PSMA3-AS1 | LncRNA | Novel | 0.031707 | None | 2299 | 2341 | 11 | 42.8077520 |
| SRR2991181 | ENSG00000257621.8 | ENST00000556400.5 | PSMA3-AS1 | LncRNA | Novel | 0.031707 | None | 248 | 290 | 11 | 42.8077520 |
| SRR2991181_alt | ENSG00000257621.8 | ENST00000556400.5 | PSMA3-AS1 | LncRNA | Novel | 0.031707 | None | 248 | 290 | 11 | 42.8077520 |
| SRR2991181 | ENSG00000257621.8 | ENST00000555707.5 | PSMA3-AS1 | LncRNA | Novel | 0.031707 | None | 387 | 429 | 11 | 42.8077520 |
| SRR2991181_alt | ENSG00000257621.8 | ENST00000555707.5 | PSMA3-AS1 | LncRNA | Novel | 0.031707 | None | 387 | 429 | 11 | 42.8077520 |
| Min Ribo P value | 0.031707 |
| Min TIS P value | None |
| Ribo-seq ID | Cell or Tissue | Phenotype | Ribo-seq Source Details | PMID |
|---|
| SRR2991181 | SH-SY5Y | Neuroblastoma | GSM1970518 | 31109297; |
| SRR2991181_alt | SH-SY5Y | Neuroblastoma | GSM1970518 | 31109297; |
Mass Spectrometry Information
Function and Disease
| Functional domain prediction |  |
| Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
|---|
| No results |
| Disease | Detected |
|---|
| No results |
Related Variants
| Variant ID | Consequence to sORF | rsID | Ribo-seq ID |
|---|
| No results |
Related Small Proteins with Different TISs
| SmProt ID | Small Protein Length | Start Codon | Strand | Blocks |
|---|
| SPROHSA370548 | 28 | TTG | - | 58273954-58274010, 58291634-58291665 |
| SPROHSA200503 | 37 | ATG | - | 58273954-58274010, 58291634-58291692 |
| SPROHSA4969 | 43 | AAG | - | 58273954-58274010, 58291634-58291707, 58297954-58297957 |
SmProt