Specific Information of Small Protein : SPROHSA200503
General Information
Small Protein ID | SPROHSA200503 |
Organism | Human (Homo sapiens) |
Small Protein Sequence | MGKLSRCSSLRNLDLRSVCGTSIKMIYGNKVLSLCLK* |
RNA Sequence | ATGGGAAAATTAAGCAGATGCTCCAGTTTGAGAAACCTGGATCTGCGATCTGTTTGTGGTACCAGCATCAAGATGATTTATGGTAATAAGGTACTCAGTCTTTGCTTAAAATAA |
Protein Length | 37 |
Start Codon | ATG |
Location | chr14:58273954-58291692:- |
Blocks | 58273954-58274010,58291634-58291692 |
Mean PhyloCSF | -8.20535090723 |
Data Source | Ribosome profiling; Literature; |
Related Genes | ENSG00000139971; ARMH4; ENSG00000257621; PSMA3-AS1; ENSG00000180189; HMGB1P14; ENSG00000279636; AL132989.2; NONHSAG015097;NONHSAG015108;NONHSAG068810; |
Mass (Da) | mono. 4086.2; avg. 4089 |
Ribosome profiling
Ribo-seq ID | Ensembl Gene ID | Ensembl Transcript ID | Symbol | Gene Type | TIS Type | Ribo P value | TIS P value | Start On Trans | Stop On Trans | In-frame Count | Ribo-seq RPKM |
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SRR5047770 | ENSG00000257621.8 | ENST00000556400.5 | PSMA3-AS1 | LncRNA | Novel | 0.034225 | None | 176 | 290 | 25 | 17.3991654 |
SRR5047771 | ENSG00000257621.8 | ENST00000556400.5 | PSMA3-AS1 | LncRNA | Novel | 0.040668 | None | 176 | 290 | 42 | 16.8487068 |
SRR7207252 | ENSG00000257621.8 | ENST00000556400.5 | PSMA3-AS1 | LncRNA | Novel | 0.02314 | None | 176 | 290 | 19 | 44.0756080 |
SRR7207252_alt | ENSG00000257621.8 | ENST00000556400.5 | PSMA3-AS1 | LncRNA | Novel | 0.02314 | None | 176 | 290 | 19 | 44.0756080 |
GSE83493 | ENSG00000257621.8 | ENST00000556400.5 | PSMA3-AS1 | LncRNA | Novel | 0.025483 | None | 176 | 290 | 16 | 16.8197565 |
GSE83493_alt | ENSG00000257621.8 | ENST00000556400.5 | PSMA3-AS1 | LncRNA | Novel | 0.025483 | None | 176 | 290 | 16 | 16.8197565 |
SRR618770,618771,618772,618773_alt | ENSG00000257621.8 | ENST00000556400.5 | PSMA3-AS1 | LncRNA | Novel | 0.029051 | 0.000413 | 176 | 290 | 13 | 19.2511070 |
SRR5047770 | ENSG00000257621.8 | ENST00000557660.5 | PSMA3-AS1 | LncRNA | Novel | 0.034225 | None | 2227 | 2341 | 25 | 17.3991654 |
SRR5047771 | ENSG00000257621.8 | ENST00000557660.5 | PSMA3-AS1 | LncRNA | Novel | 0.040668 | None | 2227 | 2341 | 42 | 16.8487068 |
SRR7207252 | ENSG00000257621.8 | ENST00000557660.5 | PSMA3-AS1 | LncRNA | Novel | 0.02314 | None | 2227 | 2341 | 19 | 44.0756080 |
SRR7207252_alt | ENSG00000257621.8 | ENST00000557660.5 | PSMA3-AS1 | LncRNA | Novel | 0.02314 | None | 2227 | 2341 | 19 | 44.0756080 |
GSE83493 | ENSG00000257621.8 | ENST00000557660.5 | PSMA3-AS1 | LncRNA | Novel | 0.025483 | None | 2227 | 2341 | 16 | 16.8197565 |
GSE83493_alt | ENSG00000257621.8 | ENST00000557660.5 | PSMA3-AS1 | LncRNA | Novel | 0.025483 | None | 2227 | 2341 | 16 | 16.8197565 |
SRR618770,618771,618772,618773_alt | ENSG00000257621.8 | ENST00000557660.5 | PSMA3-AS1 | LncRNA | Novel | 0.029051 | 1.613E-06 | 2227 | 2341 | 13 | 19.2511070 |
Min Ribo P value | 0.02314 |
Min TIS P value | 1.613E-06 |
Ribo-seq ID | Cell or Tissue | Phenotype | Ribo-seq Source Details | PMID |
---|
GSE83493 | HeLa S3 | Cervical cancer | GSM2204389; GSM2204390; GSM2204391; GSM2204392 | 28460002; |
GSE83493_alt | HeLa S3 | Cervical cancer | GSM2204389; GSM2204390; GSM2204391; GSM2204392 | 28460002; |
SRR5047770 | iPSC-differentiated dopamine neurons | Parkinson Disease | GSM2402496; GSM2402497; GSM2402498 | NA; |
SRR5047771 | iPSC-differentiated dopamine neurons | Parkinson Disease | NA | NA; |
SRR618770,618771,618772,618773_alt | HEK293 | WT | SRR618770; SRR618771; SRR618772; SRR618773 | NA; |
SRR7207252 | MCF10A-ER-Src | Breast adenocarcinoma | GSM3150265 | 30089253; |
SRR7207252_alt | MCF10A-ER-Src | Breast adenocarcinoma | GSM3150265 | 30089253; |
Literature information
PMID | 31155234; |
Cell lines Or Tissues | left ventricle |
Phenotype | WT |
Gene ID | ENSG00000257621 |
Transcript ID | ENST00000556400 |
Symbol | NA |
ORF Type | sORF |
Gene Type | antisense |
Throughput | High-throughput Literature Mining |
Interaction | NA |
Function Description | NA |
PMID | 26687005; |
Cell lines Or Tissues | BJ |
Phenotype | NULL |
Gene ID | ENSG00000257621 |
Transcript ID | ENST00000557660 |
Symbol | RP11-349A22.5 |
ORF Type | sORF |
Gene Type | Antisense |
Throughput | High-throughput Literature Mining |
Interaction | NA |
Function Description | NA |
Mass Spectrometry Information
Function and Disease
Functional domain prediction |      |
Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
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No results |
Disease | Detected |
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No results |
Related Variants
Variant ID | Consequence to sORF | rsID | Ribo-seq ID |
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No results |
Related Small Proteins with Different TISs
SmProt ID | Small Protein Length | Start Codon | Strand | Blocks |
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SPROHSA160279 | 13 | ATG | - | 58273954-58273996 |
SPROHSA370548 | 28 | TTG | - | 58273954-58274010, 58291634-58291665 |
SPROHSA4969 | 43 | AAG | - | 58273954-58274010, 58291634-58291707, 58297954-58297957 |