SmProt

Specific Information of Small Protein : SPROHSA370547

General Information

Small Protein ID	SPROHSA370547
Organism	Human (Homo sapiens)
Small Protein Sequence	LRNLDLRSVCGTSIKMIYGNKI*
RNA Sequence	TTGAGAAACCTGGATCTGCGATCTGTTTGTGGTACCAGCATCAAGATGATTTATGGTAATAAGATATAA
Protein Length	22
Start Codon	TTG
Location	chr14:58267387-58291665:-
Blocks	58267387-58267393,58273978-58274010,58291634-58291665
Mean PhyloCSF	-8.16852176708
Data Source	Ribosome profiling;
Related Genes	ENSG00000139971; ARMH4; ENSG00000100567; PSMA3; ENSG00000258682; AL132989.1; ENSG00000257621; PSMA3-AS1; ENSG00000180189; HMGB1P14; ENSG00000279636; AL132989.2; NONHSAG015097;NONHSAG015106;NONHSAG015108;NONHSAG068810;
Mass (Da)	mono. 2493.4; avg. 2495

Ribosome profiling

Ribo-seq ID	Ensembl Gene ID	Ensembl Transcript ID	Symbol	Gene Type	TIS Type	Ribo P value	TIS P value	Start On Trans	Stop On Trans	In-frame Count	Ribo-seq RPKM
GSE105082_alt	ENSG00000257621.8	ENST00000556002.5	PSMA3-AS1	LncRNA	Novel	0.010333	None	190	259	9	8.86367314
SRR5047770_alt	ENSG00000257621.8	ENST00000556002.5	PSMA3-AS1	LncRNA	Novel	0.005233	None	190	259	16	18.3977262

Min Ribo P value	0.005233
Min TIS P value	None

Ribo-seq ID	Cell or Tissue	Phenotype	Ribo-seq Source Details	PMID
GSE105082_alt	HELA	Cervical cancer	GSM2817679; GSM2817680	30591072;
SRR5047770_alt	iPSC-differentiated dopamine neurons	Parkinson Disease	GSM2402496; GSM2402497; GSM2402498	NA;

Database information

No results

Literature information

No results

Mass Spectrometry Information

No results

Function and Disease

Functional domain prediction

Analysis	Signature Accession	Signature Description	Start location	Stop location	Score	Status of the match	InterPro accession	InterPro description	GO	Pathways
No results

Disease	Detected
No results

Related Variants

Variant ID	Consequence to sORF	rsID	Ribo-seq ID
No results

Related Small Proteins with Different TISs

SmProt ID	Small Protein Length	Start Codon	Strand	Blocks
SPROHSA160278	7	ATG	-	58267387-58267393, 58273978-58273996
SPROHSA200502	31	ATG	-	58267387-58267393, 58273978-58274010, 58291634-58291692
SPROHSA4968	37	AAG	-	58267387-58267393, 58273978-58274010, 58291634-58291707, 58297954-58297957