Specific Information of Small Protein : SPROHSA160278
General Information
| Small Protein ID | SPROHSA160278 |
| Organism | Human (Homo sapiens) |
| Small Protein Sequence | MIYGNKI* |
| RNA Sequence | ATGATTTATGGTAATAAGATATAA |
| Protein Length | 7 |
| Start Codon | ATG |
| Location | chr14:58267387-58273996:- |
| Blocks | 58267387-58267393,58273978-58273996 |
| Mean PhyloCSF | -7.9458750089 |
| Data Source | Ribosome profiling; |
| Related Genes | ENSG00000139971; ARMH4; ENSG00000100567; PSMA3; ENSG00000258682; AL132989.1; ENSG00000257621; PSMA3-AS1; NONHSAG015097;NONHSAG015106; |
| Mass (Da) | mono. 837.4; avg. 838 |
Ribosome profiling
| Ribo-seq ID | Ensembl Gene ID | Ensembl Transcript ID | Symbol | Gene Type | TIS Type | Ribo P value | TIS P value | Start On Trans | Stop On Trans | In-frame Count | Ribo-seq RPKM |
|---|
| GSE94454 | ENSG00000257621.8 | ENST00000556002.5 | PSMA3-AS1 | LncRNA | Novel | 0.048748 | None | 235 | 259 | 8 | 14.8385624 |
| GSE94454_alt | ENSG00000257621.8 | ENST00000556002.5 | PSMA3-AS1 | LncRNA | Novel | 0.048748 | None | 235 | 259 | 8 | 14.8385624 |
| GSE94454 | ENSG00000257621.8 | ENST00000555275.5 | PSMA3-AS1 | LncRNA | Novel | 0.048748 | None | 380 | 404 | 8 | 14.8385624 |
| GSE94454_alt | ENSG00000257621.8 | ENST00000555275.5 | PSMA3-AS1 | LncRNA | Novel | 0.048748 | None | 380 | 404 | 8 | 14.8385624 |
| GSE94454 | ENSG00000257621.8 | ENST00000654187.1 | PSMA3-AS1 | LncRNA | Novel | 0.048748 | None | 42 | 66 | 8 | 14.8385624 |
| GSE94454_alt | ENSG00000257621.8 | ENST00000654187.1 | PSMA3-AS1 | LncRNA | Novel | 0.048748 | None | 42 | 66 | 8 | 14.8385624 |
| GSE94454 | ENSG00000257621.8 | ENST00000554360.5 | PSMA3-AS1 | LncRNA | Novel | 0.048748 | None | 428 | 452 | 8 | 14.8385624 |
| GSE94454_alt | ENSG00000257621.8 | ENST00000554360.5 | PSMA3-AS1 | LncRNA | Novel | 0.048748 | None | 428 | 452 | 8 | 14.8385624 |
| GSE94454 | ENSG00000257621.8 | ENST00000554378.5 | PSMA3-AS1 | LncRNA | Novel | 0.048748 | None | 433 | 457 | 8 | 14.8385624 |
| GSE94454_alt | ENSG00000257621.8 | ENST00000554378.5 | PSMA3-AS1 | LncRNA | Novel | 0.048748 | None | 433 | 457 | 8 | 14.8385624 |
| Min Ribo P value | 0.048748 |
| Min TIS P value | None |
| Ribo-seq ID | Cell or Tissue | Phenotype | Ribo-seq Source Details | PMID |
|---|
| GSE94454 | Huh7 | Hepatoma | GSM2476003; GSM2476004; GSM2476005 | 28323820; |
| GSE94454_alt | Huh7 | Hepatoma | GSM2476003; GSM2476004; GSM2476005 | 28323820; |
Mass Spectrometry Information
Function and Disease
| Functional domain prediction |  |
| Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
|---|
| No results |
| Disease | Detected |
|---|
| No results |
Related Variants
| Variant ID | Consequence to sORF | rsID | Ribo-seq ID |
|---|
| No results |
Related Small Proteins with Different TISs
| SmProt ID | Small Protein Length | Start Codon | Strand | Blocks |
|---|
| SPROHSA370547 | 22 | TTG | - | 58267387-58267393, 58273978-58274010, 58291634-58291665 |
| SPROHSA200502 | 31 | ATG | - | 58267387-58267393, 58273978-58274010, 58291634-58291692 |
| SPROHSA4968 | 37 | AAG | - | 58267387-58267393, 58273978-58274010, 58291634-58291707, 58297954-58297957 |
SmProt