SmProt

Specific Information of Small Protein : SPROHSA3556

General Information

Small Protein ID	SPROHSA3556
Organism	Human (Homo sapiens)
Small Protein Sequence	KKSIPSGNLGTNNCRGRSQRMACPEDSQIHPSNRLHCRRQSGFILYSPCRLPSS*
RNA Sequence	AAGAAGAGTATACCCAGCGGGAATCTTGGTACCAATAATTGCAGAGGTAGAAGTCAGAGAATGGCCTGTCCAGAAGACAGCCAAATACATCCTTCAAACAGACTTCACTGCAGGAGACAGAGTGGATTCATCCTGTATTCTCCATGTAGACTTCCATCTTCATGA
Protein Length	54
Start Codon	AAG
Location	chr10:95876554-95907682:-
Blocks	95876554-95876660,95878224-95878263,95907662-95907682
Mean PhyloCSF	-7.87554549015
Data Source	Ribosome profiling;
Related Genes	ENSG00000138185; ENTPD1; ENSG00000226688; ENTPD1-AS1; ENSG00000188649; CC2D2B; ENSG00000270099; AL365273.2; NONHSAG061460;NONHSAG006591;
Mass (Da)	mono. 6039; avg. 6042.8

Ribosome profiling

Ribo-seq ID	Ensembl Gene ID	Ensembl Transcript ID	Symbol	Gene Type	TIS Type	Ribo P value	TIS P value	Start On Trans	Stop On Trans	In-frame Count	Ribo-seq RPKM
SRR3208921_alt	ENSG00000226688.7	ENST00000666945.1	ENTPD1-AS1	LncRNA	Novel	0.030981	None	209	374	8	10.7774188
GSE105082_alt	ENSG00000226688.7	ENST00000666945.1	ENTPD1-AS1	LncRNA	Novel	0.003487	None	209	374	16	6.58955902
GSE58207_alt	ENSG00000226688.7	ENST00000666945.1	ENTPD1-AS1	LncRNA	Novel	0.003629	0.040878	209	374	17	10.6107319
SRR3208921_alt	ENSG00000226688.7	ENST00000653870.1	ENTPD1-AS1	LncRNA	Novel	0.030981	None	221	386	8	10.7774188
GSE105082_alt	ENSG00000226688.7	ENST00000653870.1	ENTPD1-AS1	LncRNA	Novel	0.003487	None	221	386	16	6.58955902
GSE58207_alt	ENSG00000226688.7	ENST00000653870.1	ENTPD1-AS1	LncRNA	Novel	0.003629	0.040878	221	386	17	10.6107319

Min Ribo P value	0.003487
Min TIS P value	None

Ribo-seq ID	Cell or Tissue	Phenotype	Ribo-seq Source Details	PMID
GSE105082_alt	HELA	Cervical cancer	GSM2817679; GSM2817680	30591072;
GSE58207_alt	HCT116	Colorectal carcinoma	GSM1403307; GSM1403308	25510491;
SRR3208921_alt	ES cell-derived neurons TSC2-/-	Tuberous sclerosis complex	GSM2082573	27655340;

Database information

No results

Literature information

No results

Mass Spectrometry Information

No results

Function and Disease

Functional domain prediction

Analysis	Signature Accession	Signature Description	Start location	Stop location	Score	Status of the match	InterPro accession	InterPro description	GO	Pathways
MobiDBLite	mobidb-lite	consensus disorder prediction	1	18	-	T
MobiDBLite	mobidb-lite	consensus disorder prediction	1	27	-	T

Disease	Detected
No results

Related Variants

Variant ID	Consequence to sORF	rsID	Ribo-seq ID
No results

Related Small Proteins with Different TISs

SmProt ID	Small Protein Length	Start Codon	Strand	Blocks
SPROHSA125174	11	ATC	-	95876554-95876590
SPROHSA68931	17	AGG	-	95876554-95876608
SPROHSA101818	26	ATA	-	95876554-95876635
SPROHSA195425	34	ATG	-	95876554-95876659
SPROHSA11412	53	AAG	-	95876554-95876660, 95878224-95878263, 95907662-95907679
SPROHSA3194	55	AAG	-	95876554-95876660, 95878224-95878263, 95907662-95907685
SPROHSA319974	56	GTG	-	95876554-95876660, 95878224-95878263, 95907662-95907688
SPROHSA307269	57	CTG	-	95876554-95876660, 95878224-95878263, 95907662-95907691
SPROHSA121930	61	ATC	-	95876554-95876660, 95878224-95878263, 95907662-95907703
SPROHSA303834	67	CTG	-	95876554-95876660, 95878224-95878263, 95907662-95907721