SmProt

Specific Information of Small Protein : SPROHSA121930

General Information

Small Protein ID	SPROHSA121930
Organism	Human (Homo sapiens)
Small Protein Sequence	IPLVLVKKKSIPSGNLGTNNCRGRSQRMACPEDSQIHPSNRLHCRRQSGFILYSPCRLPSS*
RNA Sequence	ATCCCTCTCGTCCTGGTGAAGAAGAAGAGTATACCCAGCGGGAATCTTGGTACCAATAATTGCAGAGGTAGAAGTCAGAGAATGGCCTGTCCAGAAGACAGCCAAATACATCCTTCAAACAGACTTCACTGCAGGAGACAGAGTGGATTCATCCTGTATTCTCCATGTAGACTTCCATCTTCATGA
Protein Length	61
Start Codon	ATC
Location	chr10:95876554-95907703:-
Blocks	95876554-95876660,95878224-95878263,95907662-95907703
Mean PhyloCSF	-7.70824197544
Data Source	Ribosome profiling;
Related Genes	ENSG00000138185; ENTPD1; ENSG00000226688; ENTPD1-AS1; ENSG00000188649; CC2D2B; ENSG00000270099; AL365273.2; NONHSAG061460;NONHSAG006591;
Mass (Da)	mono. 6801.5; avg. 6805.8

Ribosome profiling

Ribo-seq ID	Ensembl Gene ID	Ensembl Transcript ID	Symbol	Gene Type	TIS Type	Ribo P value	TIS P value	Start On Trans	Stop On Trans	In-frame Count	Ribo-seq RPKM
GSE58207_alt	ENSG00000226688.7	ENST00000666945.1	ENTPD1-AS1	LncRNA	Novel	0.000424	0.026218	188	374	30	16.6107284
SRR618770,618771,618772,618773_alt	ENSG00000226688.7	ENST00000666945.1	ENTPD1-AS1	LncRNA	Novel	0.000681	0.025107	188	374	27	24.5057516
GSE58207_alt	ENSG00000226688.7	ENST00000653870.1	ENTPD1-AS1	LncRNA	Novel	0.000424	0.026218	200	386	30	16.6107284

Min Ribo P value	0.000424
Min TIS P value	0.025107

Ribo-seq ID	Cell or Tissue	Phenotype	Ribo-seq Source Details	PMID
GSE58207_alt	HCT116	Colorectal carcinoma	GSM1403307; GSM1403308	25510491;
SRR618770,618771,618772,618773_alt	HEK293	WT	SRR618770; SRR618771; SRR618772; SRR618773	NA;

Database information

No results

Literature information

No results

Mass Spectrometry Information

No results

Function and Disease

Functional domain prediction

Analysis	Signature Accession	Signature Description	Start location	Stop location	Score	Status of the match	InterPro accession	InterPro description	GO	Pathways
No results

Disease	Detected
No results

Related Variants

Variant ID	Consequence to sORF	rsID	Ribo-seq ID
No results

Related Small Proteins with Different TISs

SmProt ID	Small Protein Length	Start Codon	Strand	Blocks
SPROHSA125174	11	ATC	-	95876554-95876590
SPROHSA68931	17	AGG	-	95876554-95876608
SPROHSA101818	26	ATA	-	95876554-95876635
SPROHSA195425	34	ATG	-	95876554-95876659
SPROHSA11412	53	AAG	-	95876554-95876660, 95878224-95878263, 95907662-95907679
SPROHSA3556	54	AAG	-	95876554-95876660, 95878224-95878263, 95907662-95907682
SPROHSA3194	55	AAG	-	95876554-95876660, 95878224-95878263, 95907662-95907685
SPROHSA319974	56	GTG	-	95876554-95876660, 95878224-95878263, 95907662-95907688
SPROHSA307269	57	CTG	-	95876554-95876660, 95878224-95878263, 95907662-95907691
SPROHSA303834	67	CTG	-	95876554-95876660, 95878224-95878263, 95907662-95907721