SmProt

Specific Information of Small Protein : SPROHSA319974

General Information

Small Protein ID	SPROHSA319974
Organism	Human (Homo sapiens)
Small Protein Sequence	VKKKSIPSGNLGTNNCRGRSQRMACPEDSQIHPSNRLHCRRQSGFILYSPCRLPSS*
RNA Sequence	GTGAAGAAGAAGAGTATACCCAGCGGGAATCTTGGTACCAATAATTGCAGAGGTAGAAGTCAGAGAATGGCCTGTCCAGAAGACAGCCAAATACATCCTTCAAACAGACTTCACTGCAGGAGACAGAGTGGATTCATCCTGTATTCTCCATGTAGACTTCCATCTTCATGA
Protein Length	56
Start Codon	GTG
Location	chr10:95876554-95907688:-
Blocks	95876554-95876660,95878224-95878263,95907662-95907688
Mean PhyloCSF	-7.7959824919
Data Source	Ribosome profiling;
Related Genes	ENSG00000138185; ENTPD1; ENSG00000226688; ENTPD1-AS1; ENSG00000188649; CC2D2B; ENSG00000270099; AL365273.2; NONHSAG061460;NONHSAG006591;
Mass (Da)	mono. 6266.1; avg. 6270.1

Ribosome profiling

Ribo-seq ID	Ensembl Gene ID	Ensembl Transcript ID	Symbol	Gene Type	TIS Type	Ribo P value	TIS P value	Start On Trans	Stop On Trans	In-frame Count	Ribo-seq RPKM
SRR7207252_alt	ENSG00000226688.7	ENST00000666945.1	ENTPD1-AS1	LncRNA	Novel	0.012477	None	203	374	8	12.3721004
SRR618770,618771,618772,618773_alt	ENSG00000226688.7	ENST00000666945.1	ENTPD1-AS1	LncRNA	Novel	0.000136	0.025107	203	374	27	26.6553790
SRR964946_alt	ENSG00000226688.7	ENST00000666945.1	ENTPD1-AS1	LncRNA	Novel	0.014123	0.007775	203	374	NA	NA
SRR7207252_alt	ENSG00000226688.7	ENST00000653870.1	ENTPD1-AS1	LncRNA	Novel	0.012477	None	215	386	8	12.3721004
SRR964946_alt	ENSG00000226688.7	ENST00000653870.1	ENTPD1-AS1	LncRNA	Novel	0.014123	0.030913	215	386	NA	NA

Min Ribo P value	0.000136
Min TIS P value	None

Ribo-seq ID	Cell or Tissue	Phenotype	Ribo-seq Source Details	PMID
SRR618770,618771,618772,618773_alt	HEK293	WT	SRR618770; SRR618771; SRR618772; SRR618773	NA;
SRR7207252_alt	MCF10A-ER-Src	Breast adenocarcinoma	GSM3150265	30089253;
SRR964946_alt	HEK293	WT	SRR964946	22927429;

Database information

No results

Literature information

No results

Mass Spectrometry Information

No results

Function and Disease

Functional domain prediction

Analysis	Signature Accession	Signature Description	Start location	Stop location	Score	Status of the match	InterPro accession	InterPro description	GO	Pathways
No results

Disease	Detected
No results

Related Variants

Variant ID	Consequence to sORF	rsID	Ribo-seq ID
No results

Related Small Proteins with Different TISs

SmProt ID	Small Protein Length	Start Codon	Strand	Blocks
SPROHSA125174	11	ATC	-	95876554-95876590
SPROHSA68931	17	AGG	-	95876554-95876608
SPROHSA101818	26	ATA	-	95876554-95876635
SPROHSA195425	34	ATG	-	95876554-95876659
SPROHSA11412	53	AAG	-	95876554-95876660, 95878224-95878263, 95907662-95907679
SPROHSA3556	54	AAG	-	95876554-95876660, 95878224-95878263, 95907662-95907682
SPROHSA3194	55	AAG	-	95876554-95876660, 95878224-95878263, 95907662-95907685
SPROHSA307269	57	CTG	-	95876554-95876660, 95878224-95878263, 95907662-95907691
SPROHSA121930	61	ATC	-	95876554-95876660, 95878224-95878263, 95907662-95907703
SPROHSA303834	67	CTG	-	95876554-95876660, 95878224-95878263, 95907662-95907721