Specific Information of Small Protein : SPROHSA324731
General Information
| Small Protein ID | SPROHSA324731 |
| Organism | Human (Homo sapiens) |
| Small Protein Sequence | VRIETTEADSRAAAPTAKDKRSPALLAAPDSSQCLA* |
| RNA Sequence | GTGAGAATAGAGACCACCGAGGCCGACTCGCGGGCCGCTGCACCCACCGCCAAGGACAAAAGGAGCCCAGCGCTACTAGCTGCACCCGATTCCTCCCAGTGCTTAGCATGA |
| Protein Length | 36 |
| Start Codon | GTG |
| Location | chr12:46371289-46372529:- |
| Blocks | 46371289-46371379,46372508-46372529 |
| Mean PhyloCSF | -5.23386482613 |
| Data Source | Ribosome profiling; Literature; |
| Related Genes | ENSG00000134294; SLC38A2; ENSG00000258096; AC025031.2; NONHSAG010985;NONHSAG010986; |
| Mass (Da) | mono. 3709.9; avg. 3712.1 |
Ribosome profiling
| Ribo-seq ID | Ensembl Gene ID | Ensembl Transcript ID | Symbol | Gene Type | TIS Type | Ribo P value | TIS P value | Start On Trans | Stop On Trans | In-frame Count | Ribo-seq RPKM |
|---|
| GSE123564_1_alt | ENSG00000134294.14 | ENST00000549258.5 | SLC38A2 | Protein_coding | 5'UTR | 0.011273 | None | 242 | 353 | 74 | 132.928883 |
| GSE123564_1 | ENSG00000134294.14 | ENST00000549258.5 | SLC38A2 | Protein_coding | 5'UTR | 0.011273 | None | 242 | 353 | 74 | 132.928883 |
| GSE123564_2_alt | ENSG00000134294.14 | ENST00000549258.5 | SLC38A2 | Protein_coding | 5'UTR | 0.016261 | None | 242 | 353 | 108 | 139.480914 |
| GSE94613_2_alt | ENSG00000134294.14 | ENST00000549258.5 | SLC38A2 | Protein_coding | 5'UTR | 0.027083 | None | 242 | 353 | 46 | 86.2330004 |
| SRR6838651_alt | ENSG00000134294.14 | ENST00000549258.5 | SLC38A2 | Protein_coding | 5'UTR | 0.009432 | None | 242 | 353 | 10 | 269.831793 |
| GSE123564_1_alt | ENSG00000134294.14 | ENST00000256689.10 | SLC38A2 | Protein_coding | 5'UTR | 0.011273 | None | 244 | 355 | 74 | 132.928883 |
| GSE123564_1 | ENSG00000134294.14 | ENST00000256689.10 | SLC38A2 | Protein_coding | 5'UTR | 0.011273 | None | 244 | 355 | 74 | 132.928883 |
| GSE123564_1_alt | ENSG00000134294.14 | ENST00000553252.1 | SLC38A2 | Protein_coding | Novel | 0.011273 | None | 244 | 355 | 74 | 132.928883 |
| GSE123564_1 | ENSG00000134294.14 | ENST00000553252.1 | SLC38A2 | Protein_coding | Novel | 0.011273 | None | 244 | 355 | 74 | 132.928883 |
| GSE123564_2_alt | ENSG00000134294.14 | ENST00000256689.10 | SLC38A2 | Protein_coding | 5'UTR | 0.016261 | None | 244 | 355 | 108 | 139.480914 |
| GSE123564_2_alt | ENSG00000134294.14 | ENST00000553252.1 | SLC38A2 | Protein_coding | Novel | 0.016261 | None | 244 | 355 | 108 | 139.480914 |
| GSE94613_2_alt | ENSG00000134294.14 | ENST00000256689.10 | SLC38A2 | Protein_coding | 5'UTR | 0.027083 | None | 244 | 355 | 46 | 86.2330004 |
| GSE94613_2_alt | ENSG00000134294.14 | ENST00000553252.1 | SLC38A2 | Protein_coding | Novel | 0.027083 | None | 244 | 355 | 46 | 86.2330004 |
| SRR6838651_alt | ENSG00000134294.14 | ENST00000256689.10 | SLC38A2 | Protein_coding | 5'UTR | 0.009432 | None | 244 | 355 | 10 | 269.831793 |
| SRR6838651_alt | ENSG00000134294.14 | ENST00000553252.1 | SLC38A2 | Protein_coding | Novel | 0.009432 | None | 244 | 355 | 10 | 269.831793 |
| Min Ribo P value | 0.009432 |
| Min TIS P value | None |
| Ribo-seq ID | Cell or Tissue | Phenotype | Ribo-seq Source Details | PMID |
|---|
| GSE123564_1 | Skin fibroblasts | WT | GSM3507221; GSM3507222; GSM3507226; GSM3507227 | 30707697; |
| GSE123564_1_alt | Skin fibroblasts | WT | GSM3507221; GSM3507222; GSM3507226; GSM3507227 | 30707697; |
| GSE123564_2_alt | Skin fibroblasts: Hbs1L-deficient | Facial dysmorphism, growth restriction and retinal deposits | GSM3507223; GSM3507224; GSM3507225; GSM3507228; GSM3507229; GSM3507230 | 30707697; |
| GSE94613_2_alt | MOLM13 | Acute myeloid leukemia | GSM2481053 | 29186125; |
| SRR6838651_alt | MCF7 | Breast adenocarcinoma | GSM3042964 | 30102689; |
Literature information
| PMID | 26687005; |
| Cell lines Or Tissues | BJ |
| Phenotype | NULL |
| Gene ID | ENSG00000134294 |
| Transcript ID | ENST00000553252 |
| Symbol | NA |
| ORF Type | sORF |
| Gene Type | protein_coding |
| Throughput | High-throughput Literature Mining |
| Interaction | NA |
| Function Description | NA |
Mass Spectrometry Information
Function and Disease
| Functional domain prediction |  |
| Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 36 | - | T | | | | |
| Coils | Coil | | 36 | 36 | - | T | | | | |
| Disease | Detected |
|---|
| No results |
Related Variants
| Variant ID | Consequence to sORF | rsID | Ribo-seq ID |
|---|
| 12-46372512-G-C | Synonymous p.T6T | . | SRR5239050; SRR5239051; SRR5239052 |
Related Small Proteins with Different TISs
| SmProt ID | Small Protein Length | Start Codon | Strand | Blocks |
|---|
| SPROHSA25947 | 19 | AAG | - | 46371289-46371349 |
| SPROHSA104715 | 34 | ATA | - | 46371289-46371379, 46372508-46372523 |
SmProt