Specific Information of Small Protein : SPROHSA311389
General Information
| Small Protein ID | SPROHSA311389 |
| Organism | Human (Homo sapiens) |
| Small Protein Sequence | LSGDRCTLSSLGKTQRRLGIFLGGRGPAPRRHHVPGDPVLR |
| RNA Sequence | CTGTCCGGGGATCGCTGCACGCTGAGCTCCCTCGGCAAGACCCAGCGGCGGCTCGGGATTTTTTTGGGGGGGCGGGGACCAGCCCCGCGCCGGCACCATGTTCCTGGCGACCCTGTACTTCGC |
| Protein Length | 41 |
| Start Codon | CTG |
| Location | chr10:116272003-116272126:- |
| Blocks | 116272003-116272126 |
| Mean PhyloCSF | -5.02729269063 |
| Data Source | Ribosome profiling; |
| Related Genes | ENSG00000151892; GFRA1; |
| Mass (Da) | mono. 4432.4; avg. 4435.1 |
Ribosome profiling
| Min Ribo P value | 0.004433 |
| Min TIS P value | None |
| Ribo-seq ID | Cell or Tissue | Phenotype | Ribo-seq Source Details | PMID |
|---|
| SRR5350740_alt | MCF7 | Breast adenocarcinoma | GSM2538884 | 28388414; |
Mass Spectrometry Information
Function and Disease
| Functional domain prediction |  |
| Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction | 21 | 41 | - | T | | | | |
| Disease | Detected |
|---|
| No results |
Related Variants
| Variant ID | Consequence to sORF | rsID | Ribo-seq ID |
|---|
| 10-116272107-G-A | Non-Synonymous p.T7M | rs2577360 | SRR2818787; SRR3208885; SRR3208921; SRR5047770; SRR5350740; SRR5990809; SRR5990810; SRR5990811; SRR6838651; SRR8310197; SRR8310201; SRR8310198; SRR8310199; SRR8310200; SRR8310205; SRR810100; SRR810101; SRR1795427 |
Related Small Proteins with Different TISs
SmProt