Specific Information of Small Protein : SPROHSA259029
General Information
Small Protein IDSPROHSA259029
OrganismHuman (Homo sapiens)
Small Protein SequenceLSSLGKTQRRLGIFLGGRGPAPRRHHVPGDPVLR
RNA SequenceCTGAGCTCCCTCGGCAAGACCCAGCGGCGGCTCGGGATTTTTTTGGGGGGGCGGGGACCAGCCCCGCGCCGGCACCATGTTCCTGGCGACCCTGTACTTCGC
Protein Length34
Start CodonCTG
Locationchr10:116272003-116272105:-
Blocks116272003-116272105
Mean PhyloCSF-4.49805882047
Data SourceRibosome profiling;
Related GenesENSG00000151892; GFRA1;
Mass (Da)mono. 3700.1; avg. 3702.3
Ribosome profiling
Ribo-seq IDEnsembl Gene IDEnsembl Transcript IDSymbolGene TypeTIS TypeRibo P valueTIS P valueStart On TransStop On TransIn-frame CountRibo-seq RPKM
GSE123564_2_altENSG00000151892.14ENST00000490345.1GFRA1Protein_codingNovel0.006774None2533557098.3811463
Min Ribo P value0.006774
Min TIS P valueNone
Ribo-seq IDCell or TissuePhenotypeRibo-seq Source DetailsPMID
GSE123564_2_altSkin fibroblasts: Hbs1L-deficientFacial dysmorphism, growth restriction and retinal depositsGSM3507223; GSM3507224; GSM3507225; GSM3507228; GSM3507229; GSM350723030707697;

Database information
No results
Literature information
No results
Mass Spectrometry Information
No results
Function and Disease
Functional domain prediction Funtion   
AnalysisSignature AccessionSignature DescriptionStart locationStop locationScoreStatus of the matchInterPro accessionInterPro descriptionGOPathways
MobiDBLitemobidb-liteconsensus disorder prediction1334-T
DiseaseDetected
No results
Related Variants
Variant IDConsequence to sORFrsIDRibo-seq ID
No results
Related Small Proteins with Different TISs
SmProt IDSmall Protein LengthStart CodonStrandBlocks
SPROHSA31138941CTG-116272003-116272126
SPROHSA26047971CTG-116272003-116272216