Specific Information of Small Protein : SPROHSA298608
General Information
| Small Protein ID | SPROHSA298608 |
| Organism | Human (Homo sapiens) |
| Small Protein Sequence | LAWLFQRKQRLSDMNTVTLTTRPT* |
| RNA Sequence | CTGGCTTGGCTTTTTCAGAGGAAACAGAGACTCTCAGACATGAATACTGTGACACTGACCACCAGGCCAACTTAA |
| Protein Length | 24 |
| Start Codon | CTG |
| Location | chr10:95904860-95904935:- |
| Blocks | 95904860-95904935 |
| Mean PhyloCSF | -6.65378667831 |
| Data Source | Ribosome profiling; |
| Related Genes | ENSG00000226688; ENTPD1-AS1; ENSG00000270099; AL365273.2; NONHSAG061460; |
| Mass (Da) | mono. 2875.5; avg. 2877.3 |
Ribosome profiling
| Ribo-seq ID | Ensembl Gene ID | Ensembl Transcript ID | Symbol | Gene Type | TIS Type | Ribo P value | TIS P value | Start On Trans | Stop On Trans | In-frame Count | Ribo-seq RPKM |
|---|
| SRR4045276_alt | ENSG00000226688.7 | ENST00000671110.1 | ENTPD1-AS1 | LncRNA | Novel | 6.411E-05 | None | 106 | 181 | 10 | 31.5788069 |
| SRR4045276_alt | ENSG00000226688.7 | ENST00000452942.6 | ENTPD1-AS1 | LncRNA | Novel | 6.411E-05 | None | 108 | 183 | 10 | 31.5788069 |
| SRR4045276_alt | ENSG00000226688.7 | ENST00000427300.1 | ENTPD1-AS1 | LncRNA | Novel | 6.411E-05 | None | 109 | 184 | 10 | 31.5788069 |
| SRR4045276_alt | ENSG00000226688.7 | ENST00000669283.1 | ENTPD1-AS1 | LncRNA | Novel | 6.411E-05 | None | 116 | 191 | 10 | 31.5788069 |
| SRR618770,618771,618772,618773_alt | ENSG00000226688.7 | ENST00000669099.1 | ENTPD1-AS1 | LncRNA | Novel | 0.031341 | 0.025107 | 129 | 204 | 41 | 92.2868455 |
| SRR4045276_alt | ENSG00000226688.7 | ENST00000414006.2 | ENTPD1-AS1 | LncRNA | Novel | 6.411E-05 | None | 180 | 255 | 10 | 31.5788069 |
| SRR4045276_alt | ENSG00000226688.7 | ENST00000449419.6 | ENTPD1-AS1 | LncRNA | Novel | 6.411E-05 | None | 228 | 303 | 10 | 31.5788069 |
| SRR4045276_alt | ENSG00000226688.7 | ENST00000665049.1 | ENTPD1-AS1 | LncRNA | Novel | 6.411E-05 | None | 229 | 304 | 10 | 31.5788069 |
| SRR618770,618771,618772,618773_alt | ENSG00000226688.7 | ENST00000665049.1 | ENTPD1-AS1 | LncRNA | Novel | 0.031341 | 0.025107 | 229 | 304 | 41 | 92.2868455 |
| SRR4045276_alt | ENSG00000226688.7 | ENST00000664887.1 | ENTPD1-AS1 | LncRNA | Novel | 6.411E-05 | None | 238 | 313 | 10 | 31.5788069 |
| SRR4045276_alt | ENSG00000226688.7 | ENST00000657446.1 | ENTPD1-AS1 | LncRNA | Novel | 6.411E-05 | None | 244 | 319 | 10 | 31.5788069 |
| SRR4045276_alt | ENSG00000226688.7 | ENST00000661794.1 | ENTPD1-AS1 | LncRNA | Novel | 6.411E-05 | None | 244 | 319 | 10 | 31.5788069 |
| SRR4045276_alt | ENSG00000226688.7 | ENST00000452728.5 | ENTPD1-AS1 | LncRNA | Novel | 6.411E-05 | None | 330 | 405 | 10 | 31.5788069 |
| Min Ribo P value | 6.411E-05 |
| Min TIS P value | None |
| Ribo-seq ID | Cell or Tissue | Phenotype | Ribo-seq Source Details | PMID |
|---|
| SRR4045276_alt | Meg01 cells | WT | GSM2285909 | 27681415; |
| SRR618770,618771,618772,618773_alt | HEK293 | WT | SRR618770; SRR618771; SRR618772; SRR618773 | NA; |
Mass Spectrometry Information
Function and Disease
| Functional domain prediction |  |
| Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
|---|
| No results |
| Disease | Detected |
|---|
| No results |
Related Variants
| Variant ID | Consequence to sORF | rsID | Ribo-seq ID |
|---|
| No results |
Related Small Proteins with Different TISs
SmProt