Specific Information of Small Protein : SPROHSA268342
General Information
| Small Protein ID | SPROHSA268342 |
| Organism | Human (Homo sapiens) |
| Small Protein Sequence | LPGPRGSGARAFGNLRCAKSVRRRGLSPPPLASARERQLAWLFQRKQRLSDMNTVTLTTRPT* |
| RNA Sequence | CTGCCAGGACCCAGAGGGAGCGGAGCACGCGCCTTTGGGAATCTTCGGTGCGCCAAGTCTGTTCGCCGCCGGGGTCTATCACCCCCGCCCCTCGCCTCTGCCCGTGAGCGTCAGCTGGCTTGGCTTTTTCAGAGGAAACAGAGACTCTCAGACATGAATACTGTGACACTGACCACCAGGCCAACTTAA |
| Protein Length | 62 |
| Start Codon | CTG |
| Location | chr10:95904860-95907888:- |
| Blocks | 95904860-95904938,95907777-95907888 |
| Mean PhyloCSF | -7.96119576913 |
| Data Source | Ribosome profiling; |
| Related Genes | ENSG00000226688; ENTPD1-AS1; ENSG00000188649; CC2D2B; ENSG00000270099; AL365273.2; NONHSAG061460; |
| Mass (Da) | mono. 6898.8; avg. 6902.9 |
Ribosome profiling
| Min Ribo P value | 3.387E-05 |
| Min TIS P value | None |
| Ribo-seq ID | Cell or Tissue | Phenotype | Ribo-seq Source Details | PMID |
|---|
| GSE94454_alt | Huh7 | Hepatoma | GSM2476003; GSM2476004; GSM2476005 | 28323820; |
| SRR4045276_alt | Meg01 cells | WT | GSM2285909 | 27681415; |
Mass Spectrometry Information
Function and Disease
| Functional domain prediction |  |
| Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
|---|
| No results |
| Disease | Detected |
|---|
| No results |
Related Variants
| Variant ID | Consequence to sORF | rsID | Ribo-seq ID |
|---|
| 10-95907825-G-T | Non-Synonymous p.R22S | rs41291578 | SRR1795427; SRR964946; SRR618772; SRR618771; SRR618773 |
Related Small Proteins with Different TISs
SmProt