Specific Information of Small Protein : SPROHSA295062
General Information
| Small Protein ID | SPROHSA295062 |
| Organism | Human (Homo sapiens) |
| Small Protein Sequence | LACQDPEGAEHAPLGIFGAPSLFAAGVYHPRPSPLPVSV* |
| RNA Sequence | CTGGCCTGCCAGGACCCAGAGGGAGCGGAGCACGCGCCTTTGGGAATCTTCGGTGCGCCAAGTCTGTTCGCCGCCGGGGTCTATCACCCCCGCCCCTCGCCTCTGCCCGTGAGCGTGTGA |
| Protein Length | 39 |
| Start Codon | CTG |
| Location | chr10:95907773-95907893:- |
| Blocks | 95907773-95907893 |
| Mean PhyloCSF | -8.82279997667 |
| Data Source | Ribosome profiling; |
| Related Genes | ENSG00000226688; ENTPD1-AS1; ENSG00000188649; CC2D2B; ENSG00000270099; AL365273.2; NONHSAG061460; |
| Mass (Da) | mono. 3967; avg. 3969.5 |
Ribosome profiling
| Ribo-seq ID | Ensembl Gene ID | Ensembl Transcript ID | Symbol | Gene Type | TIS Type | Ribo P value | TIS P value | Start On Trans | Stop On Trans | In-frame Count | Ribo-seq RPKM |
|---|
| GSE123564_2_alt | ENSG00000226688.7 | ENST00000653870.1 | ENTPD1-AS1 | LncRNA | Novel | 0.03518 | None | 10 | 130 | 6 | 7.16776923 |
| GSE123564_2_alt | ENSG00000226688.7 | ENST00000657446.1 | ENTPD1-AS1 | LncRNA | Novel | 0.03518 | None | 10 | 130 | 6 | 7.16776923 |
| GSE123564_2_alt | ENSG00000226688.7 | ENST00000661794.1 | ENTPD1-AS1 | LncRNA | Novel | 0.03518 | None | 10 | 130 | 6 | 7.16776923 |
| GSE123564_2_alt | ENSG00000226688.7 | ENST00000655193.1 | ENTPD1-AS1 | LncRNA | Novel | 0.03518 | None | 245 | 365 | 6 | 7.16776923 |
| GSE123564_2_alt | ENSG00000226688.7 | ENST00000664887.1 | ENTPD1-AS1 | LncRNA | Novel | 0.03518 | None | 4 | 124 | 6 | 7.16776923 |
| GSE123564_2_alt | ENSG00000226688.7 | ENST00000662079.1 | ENTPD1-AS1 | LncRNA | Novel | 0.03518 | None | 8 | 128 | 6 | 7.16776923 |
| Min Ribo P value | 0.03518 |
| Min TIS P value | None |
| Ribo-seq ID | Cell or Tissue | Phenotype | Ribo-seq Source Details | PMID |
|---|
| GSE123564_2_alt | Skin fibroblasts: Hbs1L-deficient | Facial dysmorphism, growth restriction and retinal deposits | GSM3507223; GSM3507224; GSM3507225; GSM3507228; GSM3507229; GSM3507230 | 30707697; |
Mass Spectrometry Information
Function and Disease
| Functional domain prediction |  |
| Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
|---|
| No results |
| Disease | Detected |
|---|
| No results |
Related Variants
| Variant ID | Consequence to sORF | rsID | Ribo-seq ID |
|---|
| 10-95907825-G-T | Non-Synonymous p.F23L | rs41291578 | SRR1795427; SRR964946; SRR618772; SRR618771; SRR618773 |
Related Small Proteins with Different TISs
SmProt