Specific Information of Small Protein : SPROHSA135187
General Information
| Small Protein ID | SPROHSA135187 |
| Organism | Human (Homo sapiens) |
| Small Protein Sequence | IFGAPSLFAAGVYHPRPSPLPVSV* |
| RNA Sequence | ATCTTCGGTGCGCCAAGTCTGTTCGCCGCCGGGGTCTATCACCCCCGCCCCTCGCCTCTGCCCGTGAGCGTGTGA |
| Protein Length | 24 |
| Start Codon | ATC |
| Location | chr10:95907773-95907848:- |
| Blocks | 95907773-95907848 |
| Mean PhyloCSF | -8.99665330887 |
| Data Source | Ribosome profiling; |
| Related Genes | ENSG00000226688; ENTPD1-AS1; ENSG00000188649; CC2D2B; ENSG00000270099; AL365273.2; NONHSAG061460; |
| Mass (Da) | mono. 2478.3; avg. 2479.9 |
Ribosome profiling
| Ribo-seq ID | Ensembl Gene ID | Ensembl Transcript ID | Symbol | Gene Type | TIS Type | Ribo P value | TIS P value | Start On Trans | Stop On Trans | In-frame Count | Ribo-seq RPKM |
|---|
| GSE58207_alt | ENSG00000226688.7 | ENST00000655193.1 | ENTPD1-AS1 | LncRNA | Novel | 0.006451 | 0.040878 | 290 | 365 | 21 | 28.8362245 |
| GSE58207_alt | ENSG00000226688.7 | ENST00000449419.6 | ENTPD1-AS1 | LncRNA | Novel | 0.006451 | 0.040878 | 42 | 117 | 21 | 28.8362245 |
| GSE58207_alt | ENSG00000226688.7 | ENST00000665049.1 | ENTPD1-AS1 | LncRNA | Novel | 0.006451 | 0.040878 | 43 | 118 | 21 | 28.8362245 |
| GSE58207_alt | ENSG00000226688.7 | ENST00000666945.1 | ENTPD1-AS1 | LncRNA | Novel | 0.006451 | 0.040878 | 43 | 118 | 21 | 28.8362245 |
| GSE58207_alt | ENSG00000226688.7 | ENST00000664887.1 | ENTPD1-AS1 | LncRNA | Novel | 0.006451 | 0.040878 | 49 | 124 | 21 | 28.8362245 |
| GSE58207_alt | ENSG00000226688.7 | ENST00000662079.1 | ENTPD1-AS1 | LncRNA | Novel | 0.006451 | 0.040878 | 53 | 128 | 21 | 28.8362245 |
| GSE58207_alt | ENSG00000226688.7 | ENST00000653870.1 | ENTPD1-AS1 | LncRNA | Novel | 0.006451 | 0.040878 | 55 | 130 | 21 | 28.8362245 |
| GSE58207_alt | ENSG00000226688.7 | ENST00000657446.1 | ENTPD1-AS1 | LncRNA | Novel | 0.006451 | 0.040878 | 55 | 130 | 21 | 28.8362245 |
| GSE58207_alt | ENSG00000226688.7 | ENST00000661794.1 | ENTPD1-AS1 | LncRNA | Novel | 0.006451 | 0.040878 | 55 | 130 | 21 | 28.8362245 |
| Min Ribo P value | 0.006451 |
| Min TIS P value | 0.040878 |
| Ribo-seq ID | Cell or Tissue | Phenotype | Ribo-seq Source Details | PMID |
|---|
| GSE58207_alt | HCT116 | Colorectal carcinoma | GSM1403307; GSM1403308 | 25510491; |
Mass Spectrometry Information
Function and Disease
| Functional domain prediction |  |
| Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
|---|
| No results |
| Disease | Detected |
|---|
| No results |
Related Variants
| Variant ID | Consequence to sORF | rsID | Ribo-seq ID |
|---|
| 10-95907825-G-T | Non-Synonymous p.F8L | rs41291578 | SRR1795427; SRR964946; SRR618772; SRR618771; SRR618773 |
Related Small Proteins with Different TISs
SmProt