Specific Information of Small Protein : SPROHSA2844
General Information
| Small Protein ID | SPROHSA2844 |
| Organism | Human (Homo sapiens) |
| Small Protein Sequence | KNSSNFKKAKRVKTGWKRERPR* |
| RNA Sequence | AAGAACTCTTCCAACTTCAAAAAAGCCAAGAGAGTCAAAACAGGATGGAAAAGAGAAAGACCTAGATGA |
| Protein Length | 22 |
| Start Codon | AAG |
| Location | chr1:220627294-220627363:+ |
| Blocks | 220627294-220627363 |
| Mean PhyloCSF | -4.18839129158 |
| Data Source | Ribosome profiling; |
| Related Genes | ENSG00000116141; MARK1; ENSG00000233012; HDAC1P2; NONHSAG004352; |
| Mass (Da) | mono. 2700.6; avg. 2702.1 |
Ribosome profiling
| Ribo-seq ID | Ensembl Gene ID | Ensembl Transcript ID | Symbol | Gene Type | TIS Type | Ribo P value | TIS P value | Start On Trans | Stop On Trans | In-frame Count | Ribo-seq RPKM |
|---|
| GSE103308_alt | ENSG00000233012.2 | ENST00000602936.1 | HDAC1P2 | Transcribed_processed_pseudogene | Novel | 0.013754 | None | 45 | 114 | 23 | 29.6504376 |
| GSE94454_alt | ENSG00000233012.2 | ENST00000602936.1 | HDAC1P2 | Transcribed_processed_pseudogene | Novel | 0.017857 | None | 45 | 114 | 25 | 16.1288722 |
| SRR5047770_alt | ENSG00000233012.2 | ENST00000602936.1 | HDAC1P2 | Transcribed_processed_pseudogene | Novel | 0.033802 | None | 45 | 114 | 4 | 4.59943155 |
| SRR7207252_alt | ENSG00000233012.2 | ENST00000602936.1 | HDAC1P2 | Transcribed_processed_pseudogene | Novel | 0.019903 | None | 45 | 114 | 11 | 42.1592772 |
| SRR5350740_alt | ENSG00000233012.2 | ENST00000602936.1 | HDAC1P2 | Transcribed_processed_pseudogene | Novel | 0.033802 | None | 45 | 114 | 8 | 42.6097672 |
| Min Ribo P value | 0.013754 |
| Min TIS P value | None |
| Ribo-seq ID | Cell or Tissue | Phenotype | Ribo-seq Source Details | PMID |
|---|
| GSE103308_alt | RD-muscle | WT | GSM2760247 | 29696588; |
| GSE94454_alt | Huh7 | Hepatoma | GSM2476003; GSM2476004; GSM2476005 | 28323820; |
| SRR5047770_alt | iPSC-differentiated dopamine neurons | Parkinson Disease | GSM2402496; GSM2402497; GSM2402498 | NA; |
| SRR5350740_alt | MCF7 | Breast adenocarcinoma | GSM2538884 | 28388414; |
| SRR7207252_alt | MCF10A-ER-Src | Breast adenocarcinoma | GSM3150265 | 30089253; |
Mass Spectrometry Information
Function and Disease
| Functional domain prediction |  |
| Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
|---|
| No results |
| Disease | Detected |
|---|
| No results |
Related Variants
| Variant ID | Consequence to sORF | rsID | Ribo-seq ID |
|---|
| No results |
Related Small Proteins with Different TISs
SmProt