Specific Information of Small Protein : SPROHSA240468
General Information
| Small Protein ID | SPROHSA240468 |
| Organism | Human (Homo sapiens) |
| Small Protein Sequence | IACEEEFSDSDEVREGGHKNSSNFKKAKRVKTGWKRERPR* |
| RNA Sequence | ATTGCCTGTGAGGAAGAGTTCTCTGACTCTGATGAGGTGAGAGAGGGTGGCCACAAGAACTCTTCCAACTTCAAAAAAGCCAAGAGAGTCAAAACAGGATGGAAAAGAGAAAGACCTAGATGA |
| Protein Length | 40 |
| Start Codon | ATT |
| Location | chr1:220627240-220627363:+ |
| Blocks | 220627240-220627363 |
| Mean PhyloCSF | -3.73678048064 |
| Data Source | Ribosome profiling; |
| Related Genes | ENSG00000116141; MARK1; ENSG00000233012; HDAC1P2; NONHSAG004352; |
| Mass (Da) | mono. 4690.4; avg. 4693.1 |
Ribosome profiling
| Ribo-seq ID | Ensembl Gene ID | Ensembl Transcript ID | Symbol | Gene Type | TIS Type | Ribo P value | TIS P value | Start On Trans | Stop On Trans | In-frame Count | Ribo-seq RPKM |
|---|
| GSE45833_5_alt | ENSG00000233012.2 | ENST00000453661.1 | HDAC1P2 | Transcribed_processed_pseudogene | Novel | 0.035226 | None | 1190 | 1313 | 3 | 9.40076010 |
| GSE45833_4_alt | ENSG00000233012.2 | ENST00000453661.1 | HDAC1P2 | Transcribed_processed_pseudogene | Novel | 0.038879 | None | 1190 | 1313 | 6 | 10.5395007 |
| SRR5047770_alt | ENSG00000233012.2 | ENST00000453661.1 | HDAC1P2 | Transcribed_processed_pseudogene | Novel | 0.011155 | None | 1190 | 1313 | 5 | 3.22521114 |
| GSE94613_2_alt | ENSG00000233012.2 | ENST00000453661.1 | HDAC1P2 | Transcribed_processed_pseudogene | Novel | 0.048603 | None | 1190 | 1313 | 8 | 13.5339173 |
| Min Ribo P value | 0.011155 |
| Min TIS P value | None |
| Ribo-seq ID | Cell or Tissue | Phenotype | Ribo-seq Source Details | PMID |
|---|
| GSE45833_4_alt | BJ cells | Proliferation | GSM1047589 | 23594524; |
| GSE45833_5_alt | BJ cells | Senescence | GSM1047590 | 23594524; |
| GSE94613_2_alt | MOLM13 | Acute myeloid leukemia | GSM2481053 | 29186125; |
| SRR5047770_alt | iPSC-differentiated dopamine neurons | Parkinson Disease | GSM2402496; GSM2402497; GSM2402498 | NA; |
Mass Spectrometry Information
Function and Disease
| Functional domain prediction |  |
| Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
|---|
| No results |
| Disease | Detected |
|---|
| No results |
Related Variants
| Variant ID | Consequence to sORF | rsID | Ribo-seq ID |
|---|
| No results |
Related Small Proteins with Different TISs
| SmProt ID | Small Protein Length | Start Codon | Strand | Blocks |
|---|
| SPROHSA2844 | 22 | AAG | + | 220627294-220627363 |
| SPROHSA134337 | 47 | ATC | + | 220627219-220627363 |
SmProt