Specific Information of Small Protein : SPROHSA26507
General Information
| Small Protein ID | SPROHSA26507 |
| Organism | Human (Homo sapiens) |
| Small Protein Sequence | KDHFRNDTNTQSFYHEKWIYVHKESTKERHGYCTLGEAFNRLDFSSAIQDIRRFNYVVK |
| RNA Sequence | AAGGACCATTTTAGAAATGACACAAATACTCAAAGTTTTTATCATGAAAAATGGATCTATGTCCATAAAGAAAGCACAAAAGAAAGGCATGGCTATTGCACCTTGGGAGAAGCCTTTAATCGGTTAGACTTCTCAAGTGCAATTCAAGATATCCGAAGGTTCAATTATGTGGTCAAA |
| Protein Length | 59 |
| Start Codon | AAG |
| Location | chr1:805798-810100:- |
| Blocks | 805798-805891,808573-808623,810066-810100 |
| Mean PhyloCSF | -6.25836158742 |
| Data Source | Ribosome profiling; |
| Related Genes | ENSG00000230021; AL669831.3; ENSG00000237491; AL669831.5; ENSG00000230092; AL669831.4; NONHSAG000044;NONHSAG000046;NONHSAG057401; |
| Mass (Da) | mono. 7223.5; avg. 7227.9 |
Ribosome profiling
| Ribo-seq ID | Ensembl Gene ID | Ensembl Transcript ID | Symbol | Gene Type | TIS Type | Ribo P value | TIS P value | Start On Trans | Stop On Trans | In-frame Count | Ribo-seq RPKM |
|---|
| GSE105082_alt | ENSG00000230092.7 | ENST00000590817.3 | AL669831.4 | Transcribed_unprocessed_pseudogene | Novel | 0.031684 | None | 61 | 238 | 7 | 2.68747905 |
| GSE65778 | ENSG00000230092.7 | ENST00000590817.3 | AL669831.4 | Transcribed_unprocessed_pseudogene | Novel | 0.019994 | None | 61 | 238 | 8 | 7.92588369 |
| Min Ribo P value | 0.019994 |
| Min TIS P value | None |
| Ribo-seq ID | Cell or Tissue | Phenotype | Ribo-seq Source Details | PMID |
|---|
| GSE105082_alt | HELA | Cervical cancer | GSM2817679; GSM2817680 | 30591072; |
| GSE65778 | HEK293T | WT | GSM1606107; GSM1606108 | 25719440; |
Mass Spectrometry Information
Function and Disease
| Functional domain prediction |  |
| Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
|---|
| No results |
| Disease | Detected |
|---|
| No results |
Related Variants
| Variant ID | Consequence to sORF | rsID | Ribo-seq ID |
|---|
| No results |
Related Small Proteins with Different TISs
| SmProt ID | Small Protein Length | Start Codon | Strand | Blocks |
|---|
| SPROHSA76067 | 31 | AGG | - | 224030703-224030796 |
| SPROHSA76068 | 31 | AGG | - | 805798-805891 |
SmProt