SmProt

Specific Information of Small Protein : SPROHSA136184

General Information

Small Protein ID	SPROHSA136184
Organism	Human (Homo sapiens)
Small Protein Sequence	MKKKKLLEDDFEVNVSNAWFQAMYTSHLFNVHPSDPNFKKTKAVEKTLEEKAWQREQKKQELTQAIKKKEGQ*
RNA Sequence	atgaaaaaaaagaaATTATTAGAGGATGACTTTGAGGTAAATGTTAGCAATGCATGGTTTCAAGCAATGTACACTTCCCACTTGTTCAATGTGCATCCCTCAGATCCCAATTTCAAGAAAACAAAAGCTGTGGAAAAAACCCTTGAGGAGAAAGCCTGGCAAAGAGAACAGAAAAAACAAGAACTTACTCAGGCAATAAAGAAAAAAGAGggccagTGA
Protein Length	72
Start Codon	atg
Location	chr8:53973682-53974132:+
Blocks	53973682-53973898,53974129-53974132
Mean PhyloCSF	0
Data Source	Ribosome profiling;
Related Genes	ENSG00000187735; TCEA1; ENSG00000253667; AC100821.1;
Mass (Da)	mono. 8575.5; avg. 8580.7

Ribosome profiling

Ribo-seq ID	Ensembl Gene ID	Ensembl Transcript ID	Symbol	Gene Type	TIS Type	Ribo P value	TIS P value	Start On Trans	Stop On Trans	In-frame Count	Ribo-seq RPKM
GSE94454	ENSG00000253667.2	ENST00000523153.2	AC100821.1	Processed_pseudogene	Novel	0.029625	None	2182	2401	21	4.26862755

Min Ribo P value	0.029625
Min TIS P value	None

Ribo-seq ID	Cell or Tissue	Phenotype	Ribo-seq Source Details	PMID
GSE94454	Huh7	Hepatoma	GSM2476003; GSM2476004; GSM2476005	28323820;

Database information

No results

Literature information

No results

Mass Spectrometry Information

No results

Function and Disease

Functional domain prediction

Analysis	Signature Accession	Signature Description	Start location	Stop location	Score	Status of the match	InterPro accession	InterPro description	GO	Pathways
No results

Disease	Detected
No results

Related Variants

Variant ID	Consequence to sORF	rsID	Ribo-seq ID
8-53973701-T-A	Non-Synonymous p.L7I	.	SRR5382423; SRR6053333; SRR1333393; SRR1795425

Related Small Proteins with Different TISs

SmProt ID	Small Protein Length	Start Codon	Strand	Blocks
SPROHSA244265	90	ATT	+	53973628-53973898, 53974129-53974132
SPROHSA14000	91	AAG	+	53973625-53973898, 53974129-53974132
SPROHSA719	98	AAG	+	53973604-53973898, 53974129-53974132