Specific Information of Small Protein : SPROHSA121592
General Information
| Small Protein ID | SPROHSA121592 |
| Organism | Human (Homo sapiens) |
| Small Protein Sequence | IPELSRRRRWLLPDPEFPLSLDGAELWAARAAQLSGDRCTLSSLGKTQRRLGIFLGGRGPAPRRHHVPGDPVLRAAALGLAPVGRSERRRPPGLRESQ* |
| RNA Sequence | ATCCCGGAGCTGAGTCGCCGGCGGCGGTGGCTGCTGCCAGACCCGGAGTTTCCTCTTTCACTGGATGGAGCTGAACTTTGGGCGGCCAGAGCAGCACAGCTGTCCGGGGATCGCTGCACGCTGAGCTCCCTCGGCAAGACCCAGCGGCGGCTCGGGATTTTTTTGGGGGGGCGGGGACCAGCCCCGCGCCGGCACCATGTTCCTGGCGACCCTGTACTTCGCGCTGCCGCTCTTGGACTTGCTCCTGTCGGCCGAAGTGAGCGGCGGAGACCGCCTGGATTGCGTGAAAGCCAGTGA |
| Protein Length | 98 |
| Start Codon | ATC |
| Location | chr10:116271054-116272225:- |
| Blocks | 116271054-116271115,116271989-116272225 |
| Mean PhyloCSF | -3.26946087998 |
| Data Source | Ribosome profiling; |
| Related Genes | ENSG00000151892; GFRA1; |
| Mass (Da) | mono. 10768.9; avg. 10775.3 |
Ribosome profiling
| Ribo-seq ID | Ensembl Gene ID | Ensembl Transcript ID | Symbol | Gene Type | TIS Type | Ribo P value | TIS P value | Start On Trans | Stop On Trans | In-frame Count | Ribo-seq RPKM |
|---|
| SRR5350740_alt | ENSG00000151892.14 | ENST00000439649.7 | GFRA1 | Protein_coding | 5'UTR | 0.003424 | None | 172 | 469 | 85 | 105.179412 |
| SRR5350740_alt | ENSG00000151892.14 | ENST00000355422.10 | GFRA1 | Protein_coding | 5'UTR | 0.003424 | None | 355 | 652 | 85 | 105.179412 |
| SRR5350740_alt | ENSG00000151892.14 | ENST00000369236.5 | GFRA1 | Protein_coding | 5'UTR | 0.003424 | None | 57 | 354 | 85 | 105.179412 |
| Min Ribo P value | 0.003424 |
| Min TIS P value | None |
| Ribo-seq ID | Cell or Tissue | Phenotype | Ribo-seq Source Details | PMID |
|---|
| SRR5350740_alt | MCF7 | Breast adenocarcinoma | GSM2538884 | 28388414; |
Mass Spectrometry Information
Function and Disease
| Functional domain prediction |  |
| Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
|---|
| No results |
| Disease | Detected |
|---|
| No results |
Related Variants
| Variant ID | Consequence to sORF | rsID | Ribo-seq ID |
|---|
| 10-116272107-G-A | Non-Synonymous p.T40M | rs2577360 | SRR2818787; SRR3208885; SRR3208921; SRR5047770; SRR5350740; SRR5990809; SRR5990810; SRR5990811; SRR6838651; SRR8310197; SRR8310201; SRR8310198; SRR8310199; SRR8310200; SRR8310205; SRR810100; SRR810101; SRR1795427 |
Related Small Proteins with Different TISs
| SmProt ID | Small Protein Length | Start Codon | Strand | Blocks |
|---|
| SPROHSA260480 | 95 | CTG | - | 116271054-116271115, 116271989-116272216 |
SmProt