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Detail Information of piRNA: piR-mmu-9995

General Information
piRBase Id piR-mmu-9995 Accession AB251157
Organism Mouse Number of methods 3
Sequence CTAGAGGCTTGGAAATGAC Number of papers 4
Length 19 Golden piRNA -
Aliases PIR188832; PIR188834; gsRNA187;
Datasets
Dataset Accession Reads PubMed Method Tissue
5 N/A N/A 16751777 MILI IP testis
10 N/A N/A 16766680 small RNA testis
132 GSM475279 466 20022248 Miwi IP adult testis
133 GSM475280 40 20022248 Mili IP adult testis
441 GSM1096582 614 23523368 small RNA Wild Type 10.5 dpp testes
443 GSM1096583 193 23523368 small RNA Wild Type 12.5 dpp testes
444 GSM1096600 7 23523368 oxidized small RNA Wild Type 12.5 dpp testes
445 GSM1096584 214 23523368 small RNA Wild Type 14.5 dpp testes
446 GSM1096601 762 23523368 oxidized small RNA Wild Type 14.5 dpp testes
447 GSM1096585 303 23523368 small RNA Wild Type 17.5 dpp testes
448 GSM1096602 8 23523368 oxidized small RNA Wild Type 17.5 dpp testes
449 GSM1096586 402 23523368 small RNA Wild Type 20.5 dpp testes
450 GSM1096603 8 23523368 oxidized small RNA Wild Type 20.5 dpp testes
451 GSM1096587 756 23523368 small RNA Wild Type 6 weeks dpp testes
452 GSM1096604 4 23523368 oxidized small RNA Wild Type 6 weeks dpp testes
Location in GRCm38
2 best hit(s) with 0 mismatch(es) in GRCm38
No. Location Gene RepeatMaker
Location 1 9:67716021-67716040:+
Location 2 9:67716837-67716856:- Low_complexity Low_complexity A-rich;
piRNA Expression
Sample CPM
GSM179088 0
GSM261957 0
GSM261958 0
GSM261959 0
GSM319953 0
GSM319954 0
GSM319955 0
GSM319956 0
GSM319957 0
GSM319958 0
GSM319959 0
GSM319960 0
GSM319961 0
GSM400967 0
Sample CPM
GSM400968 0
GSM400969 0
GSM433288 3.5128
GSM433289 11.3745
GSM433290 11.8929
GSM433291 6.4031
GSM433292 1.945
GSM433293 1.7015
GSM433294 0
GSM433295 0
GSM475279 44.7604
GSM475280 3.6368
GSM475281 101.3177
GSM678422 0.0531
The Expression of piRNA: piR-mmu-9995
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P value calculation
Sample1
Sample2
Target mRNA
No record.
Target lncRNA
No record.
Target Network
No record.
Disease Information
No record.
Reference
PubMed 16751777 Journal Nature. 2006 Jul 13;442(7099):203-7.
Title A novel class of small RNAs bind to MILI protein in mouse testes
Authors Aravin A, Gaidatzis D, Pfeffer S, Lagos-Quintana M, Landgraf P, Iovino N, Morris P, Brownstein MJ, Kuramochi-Miyagawa S, Nakano T, Chien M, Russo JJ, Ju J, Sheridan R, Sander C, Zavolan M, Tuschl T.
PubMed 16766680 Journal Genes Dev. 2006 Jul 1;20(13):1709-14.
Title A novel class of small RNAs in mouse spermatogenic cells.
Authors Grivna ST, Beyret E, Wang Z, Lin H.
PubMed 20022248 Journal Curr Biol. 2009 Dec 29;19(24):2066-76.
Title A broadly conserved pathway generates 3'UTR-directed primary piRNAs.
Authors Robine N, Lau NC, Balla S, Jin Z, Okamura K, Kuramochi-Miyagawa S, Blower MD, Lai EC.
PubMed 23523368 Journal Mol Cell. 2013 Apr 11;50(1):67-81. doi: 10.1016/j.molcel.2013.02.016.
Title An ancient transcription factor initiates the burst of piRNA production during early meiosis in mouse testes
Authors Li XZ, Roy CK, Dong X, Bolcun-Filas E et al.