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Download piRNA related information from piRBase
| Download piRNA fasta file | |||
|---|---|---|---|
| Abbreviations | Species | Download Address | MD5 |
| aca | Sea hare | aca.fa.gz | e0e8955251f412fc07b8d73156a2f28b |
| ame | giant panda | ame.v3.0.fa.gz | aa05f71f393ee45808c5fe86cd09688c |
| bgl | B. glabrata | bgl.v3.0.fa.gz | f1402bf2b789a74ccff13da62939397b |
| bmo | Silkworm | bmo.v3.0.fa.gz | 779184de9a4c1b635f2f26f49f2ed69a |
| bta | Cow | bta.v3.0.fa.gz | c984122231a38b37cd3c79cb151610fc |
| c26 | Caenorhabditis sp 26 | c26.v3.0.fa.gz | 08139f16aeb3bb773861363ec1ce3fe8 |
| c31 | Caenorhabditis sp 31 | c31.v3.0.fa.gz | 7da14ef89ec9a6a6d3cf9c7e8cea7b26 |
| c32 | Caenorhabditis sp 32 | c32.v3.0.fa.gz | 54c6c0f172f0a192196ff416373769f7 |
| cbn | C. brenneri | cbn.v3.0.fa.gz | 58686292e21c5fe270d039808d939cad |
| cbr | C. briggsae | cbr.v3.0.fa.gz | ef2b9ce752650b7e9c3dcf70c89960a9 |
| cca | C. castelli | cca.v3.0.fa.gz | 949a365986d5069a84dfba15f1e817c3 |
| cdo | C. doughertyi | cdo.v3.0.fa.gz | bfcec4d34af032fc63ba9add1ac4f2ba |
| cel | C. elegans | cel.v3.0.fa.gz | ac7e53dd35fcee18fac86b1c0fb6b409 |
| cja | Marmoset | cja.fa.gz | fe8cdefe14bb1e4de6ede2d8cc41f6c2 |
| cma | C. macrosperma | cma.v3.0.fa.gz | 0a5100a21866860a1aadf4f007a59f9d |
| crm | C. remanei | crm.v3.0.fa.gz | 5cd9c162098d439caac1b6404c4710db |
| cvi | C. virilis | cvi.v3.0.fa.gz | 59eed12f356dd688cb4aac917de7b5c3 |
| der | D. erecta | der.fa.gz | bca96f66b1f623b4d6a6ca4f388546a1 |
| dme | D. melanogaster | dme.v3.0.fa.gz | 83f3b2702ff30b9df0c093556a0dc52d |
| dpa | D. pachys | dpa.v3.0.fa.gz | f02e10f5702a2deae5e87042ee894ce8 |
| dre | Zebrafish | dre.fa.gz | f825cb8f63f6212dc492de8243a35220 |
| dvi | D. virilis | dvi.fa.gz | e57ebaa61bf239a570d5017b56bdf412 |
| dya | D. yakuba | dya.fa.gz | a2e62b9676072815efc9b7044e26d287 |
| eca | horse | eca.v3.0.fa.gz | b12676a3d96908a6d758cb51ab97b5fe |
| gga | Chicken | gga.v3.0.fa.gz | 1f93760c973a249c2ff612f5b4e577fd |
| hco | barber pole worm | hco.v3.0.fa.gz | ba2b0186600f5dec877a910e3de9ceda |
| hpo | H. polygyrus | hpo.v3.0.fa.gz | 19485a19d1cded5b66cc154fb759e102 |
| hsa | Human | hsa.v3.0.fa.gz | 4268d4c9ebbf0953488af66332c51ded |
| mfa | Crab-eating macaque | mfa.v3.0.fa.gz | 586b2db501c48941c200e109f38028df |
| mml | Rhesus | mml.fa.gz | f9771fdef1d1338103b7c7dfc0d23ebc |
| mmu | Mouse | mmu.v3.0.fa.gz | c4c5aa5524720ecee4b4af764a8b606d |
| nbr | N. brasiliensis | nbr.v3.0.fa.gz | 579dc9b75c8296ad0196d9f8c4d15a9a |
| nve | Starlet sea anemone | nve.fa.gz | e8bcfe4c48fa93cf1bb38fad4f284d7e |
| ocu | Rabbit | ocu.fa.gz | 6d285fb25c16e44ade2f5649d2ae6424 |
| oti | O. tipulae | oti.v3.0.fa.gz | 35ddaf7e2ad9572a6296d673fe280cd2 |
| pox | P. oxycercus | pox.v3.0.fa.gz | efe41f9ae9e38bf616f2dad5b1a8e632 |
| ppc | P. pacificus | ppc.v3.0.fa.gz | fb8e0dd4b854332da1b15cb4e573cb4e |
| psa | P. sambesii | psa.v3.0.fa.gz | 4ac6b7a65278d61de6aad6f7f5787fc3 |
| rno | Rat | rno.fa.gz | 44928a0c067278d8c053bc7583be67bf |
| spa | mud crab | spa.v3.0.fa.gz | 49a4a935e07019b146804a35a571443b |
| ssc | Pig | ssc.v3.0.fa.gz | 684b531854a9ae76077c5b6efbcf8a62 |
| tbe | Tree shrew | tbe.fa.gz | 160a90d184169d27e6ce3e070222170e |
| xtr | X. tropicalis | xtr.fa.gz | 1892c57d72b68e9e3b9b111550f37e81 |
| Download gold standard piRNA set | |||
|---|---|---|---|
| Abbreviations | Species | Download Address | MD5 |
| hsa | Human | hsa.gold.fa.gz | 24f5da6a448e060c5a3bc91a7d4a6ac8 |
| mmu | Mouse | mmu.gold.fa.gz | 75bf0f25717331bfa22e8149731b5647 |
| dme | D. melanogaster | dme.gold.fa.gz | e6fb4a0e9742a96a825bd9472a9a7028 |
| bta | Cow | bta.gold.fa.gz | 73cd91c889f8af5bd9ce852fc73c08cc |
| rno | Rat | rno.gold.fa.gz | 1ef811e73d5d40381ef6c52f91affd14 |
| mfa | Crab-eating macaque | mfa.gold.fa.gz | 536637d9b8fef651679f0ef537f465b6 |
| Download piRNA bed file | ||||
|---|---|---|---|---|
| Abbreviations | Species | Genome | Download Address | MD5 |
| hsa | Human | hg19 | hsa.hg19.bed.gz | 6c41dffb7e3303f74731de7a7f7565ae |
| aca | Sea hare | aplCal3 | aca.align.bed.gz | 275e4f85686f02bdfc24089f6e7653fb |
| ame | Giant panda | ASM200744v2 | ame.align.bed.gz | 823e6cb6111c1ebcaa668f0459bd5c98 |
| bgl | B. glabrata | BglaB1 | bgl.align.bed.gz | b7959d6b3291f86b57b3cb8a68520172 |
| bmo | Silkworm | ASM15162v1 | bmo.align.bed.gz | bdcb448e898fa2813d3384ac0983cac5 |
| bta | Cow | bosTau9 | bta.align.bed.gz | 62b6cd9923acf0d65858de01f95b918d |
| c26 | Caenorhabditis sp 26 | JU2190v1 | c26.align.bed.gz | ff53b0c41834ee02acb0ac3c432bce0b |
| c31 | Caenorhabditis sp 31 | JU2585v1 | c31.align.bed.gz | 51c4c2198e3c5999c71aeb6941a55975 |
| c32 | Caenorhabditis sp 32 | JU2788v1 | c32.align.bed.gz | 759e5ed59a15eed62584f270ec30f83e |
| cbn | C. brenneri | C_brenneri_6_0_1b | cbn.align.bed.gz | e97f2e2fb95cf6b7437a2c24d0458f49 |
| cbr | C. briggsae | CB4 | cbr.align.bed.gz | 87251e72acbe839669f4d3948a48bf19 |
| cca | C. castelli | JU1956v1 | cca.align.bed.gz | e01dfada9b27cad3375614c105ac857c |
| cdo | C. doughertyi | JU1771v1 | cdo.align.bed.gz | dd5115039aed8430151b38b69ff49bb2 |
| cel | C. elegans | WBcel235 | cel.align.bed.gz | 9957393af67bffcf87bf689d43fa774d |
| cja | Marmoset | ASM275486v1 | cja.align.bed.gz | bd1ed86425c41b3d1ed34bdcb5d4cc15 |
| crm | C. remanei | C_remanei_15 | crm.align.bed.gz | 5c1c267cb8c8330b3140bd7b640ba70c |
| cvi | C. virilis | JU1968v1 | cvi.align.bed.gz | c0818020c05452c9e70ed47c1689c023 |
| der | D. erecta | DereCaf1 | der.align.bed.gz | c4a81e462bb96ebbb7d94ab6d702d497 |
| dme | D. melanogaster | BDGP6 | dme.align.bed.gz | 03dded7eeb093247346e7ee02b4b55ce |
| dpa | D. pachys | WBPS15dpa | dpa.align.bed.gz | 5bf003248f31ae8fdf56318d18dce89c |
| dre | Zebrafish | GRCz11 | dre.align.bed.gz | 264a7b51f9b7c3437f58f18097695e30 |
| dvi | D. virilis | DvirCaf1 | dvi.align.bed.gz | 7d67a19ed8070f5e56379d1fa9737791 |
| dya | D. yakuba | DyakCaf1 | dya.align.bed.gz | 2c4ce89e1be8ae8d2e73d9bfa91b021c |
| eca | horse | EquCab3 | eca.align.bed.gz | fcefc55f3bacf5d9d950ba1a241f33df |
| gga | Chicken | GRCg6 | gga.align.bed.gz | 800fa9b917120f67044ab6435e06e955 |
| hco | barber pole worm | WBPS15hco | hco.align.bed.gz | 2ce970f023a756bb0dde2860d7fb12b6 |
| hpo | H. polygyrus | WBPS15hpo | hpo.align.bed.gz | f24f27331b4b7134912ace9709600ec1 |
| hsa | Human | GRCh38 | hsa.align.bed.gz | a55f93f22a78c2dce2bd4f181e02f8e5 |
| mau | golden hamster | MesAur1 | mau.align.bed.gz | 5f4e9a2bc5364e708c8f401cbbfb7186 |
| mfa | Crab-eating macaque | macFas5 | mfa.align.bed.gz | b99d029020259c9b466d56ea0680f52c |
| mml | Rhesus | Mmul10 | mml.align.bed.gz | cc0d42019c539e296b78a033d6cd8cc9 |
| mmu | Mouse | GRCm38 | mmu.align.bed.gz | ca7e6febf2ca97f3f09984e98a593d3c |
| nbr | N. brasiliensis | WBPS15nbr | nbr.align.bed.gz | 6c5ed1491aa69f9f526cd0ad307460e2 |
| nve | Starlet sea anemone | ASM20922v1 | nve.align.bed.gz | 02a8c997877bdccb64ba6d5504849293 |
| ocu | Rabbit | OryCun2 | ocu.align.bed.gz | 2350f89899077f73e5a1ee261398f677 |
| oti | O. tipulae | WBPS15oti | oti.align.bed.gz | 79316e12cfcfd21b6c18cfc7dd5571a8 |
| pox | P. oxycercus | POXYCv1 | pox.align.bed.gz | 5ca77b1b70f266584d1c1759c03abc32 |
| ppc | P. pacificus | EIPaco | ppc.align.bed.gz | 6beb16b3eb636b66f1066f656780f911 |
| psa | P. sambesii | WBPS15psa | psa.align.bed.gz | 8ebaf220b0ee568c3add2f7d64b8f884 |
| rno | Rat | Rnor6 | rno.align.bed.gz | a9404a766fc250a3d5e4dfb65821924f |
| spa | mud crab | spa20200329 | spa.align.bed.gz | 4b501bd56c5b0bf79e82d34050c6e791 |
| ssc | Pig | Sscrofa11 | ssc.align.bed.gz | 9035a11a9a147c649aac27409a302843 |
| tbe | Tree shrew | TreeShrew | tbe.align.bed.gz | 8fa19fcd5afc60d886e905443748ced5 |
| xtr | X. tropicalis | xenTrov9 | xtr.align.bed.gz | 1d6c99996cc88cd73ad7954a200bd1e2 |