Welcome to SmProt v2.0!

Small proteins are the general term for proteins with length shorter than 100 amino acids. SmProt database contains records of Small Proteins encoded by genes, especially ones encoded by non-coding RNA genes. The selected small proteins were collected from the literature, mass spectrometry (MS) and ribosome profiling data carried out in many species, including human, mouse, zebrafish, yeast, fruitfly and so on. Moreover, SmProt database contains features for the collected small proteins on their sequences, data sources, genomic locations, tissues localization or source cell lines, and other detailed information.more


What's new!

1.Small proteins with non-AUG translational initiation were added to the database.
2.Small proteins translated from circRNAs were added to the database.
3.Improved analysis methods such as functional smORF-encoded peptide predictor (FSPP) make the prediction more accurate.
4.ChIP-seq data was used to validate the overlap of ribosome analysis and MS data, to improve the confidence of small proteins.
5.Data supplement and user-friendliness optimization of the website.



How to cite?     Hao Y., et al. 2017.SmProt: a database of small proteins encoded by annotated coding and non-coding RNA loci.Brief Bioinform bbx005.

Search




search hints: Gene Symbol or Gene IDs from related databases (eg. NONCODE, RefSeq, ENSEMBL), cell line or tissue, PubMed ID (PMID), ORF type and gene type.

NEW POINT

Statistics update

Species Num Data Sources Num ORF Types Num
human 167,785 MS data 117,099 sORF 223,077
fruitfly 39,015 Literature Mining 81,454 uORF 29,331
C.elegans 18,357 Ribosome profiling 53,459 dORF 2,495
mouse 15,581 Known Databases 2,998 NA 107
rat 8,128
zebrafish 2,994
yeast 1,875
E.coli 1,275

News

Started to upgrade SmProt v2.0 database.
March 2018
Started to collect new data sets.
September 2017
SmProt article published in Briefings in Bioinformatics.
January 2017
1st public release.
June 2016
started to collect small proteins from the literature.
December 2015
started to collect MS data sets and ribosome profiling data sets.
June 2015

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