Detail Information of piRNA: piR-mmu-9911

Dataset	Accession	Reads	PubMed	Method	Tissue
5	N/A	N/A	16751777	MILI IP	testis
6	GSM113695	5	16778019	Chromatography	testes tissue from Swiss Webster male mice, 8-10 weeks old
12	GSM822758	1	22121019	Miwi IP	Testes, C57BL/6 P14 Miwi +/+
14	GSM822761	30	22121019	Miwi IP	Testes, C57BL/6 Adult Miwi +/ADH
31	GSM684624	20	22842725	Miwi CLIP	C57BL/6 adult testis
32	GSM684625	2	22842725	Miwi CLIP	C57BL/6 adult testis
34	GSM684627	6	22842725	Miwi CLIP	C57BL/6 adult testis
35	GSM684620	53	22842725	Mili CLIP	C57BL/6 adult testis
36	GSM684621	61	22842725	Mili CLIP	C57BL/6 adult testis
38	GSM684623	45	22842725	Mili CLIP	C57BL/6 adult testis
50	GSM610965	1	21602304	small RNA	Male germ cell, Type A spermatogonia
51	GSM610966	160	21602304	small RNA	Male germ cell, Pachytene spermatocytes
52	GSM610967	62	21602304	small RNA	Male germ cell, Round spermatids
66	GSM509275	2	20439430	small RNA	MitoPLD+/+ E16.5 testis
67	GSM509276	1	20439430	small RNA	MitoPLD-/- E16.5 testis
68	GSM509277	16	20439430	small RNA	Mili-/- E16.5 testis
70	GSM509279	1	20439430	small RNA	MVH-/- E16.5 testis
71	GSM509280	1	20439430	small RNA	MitoPLD-/- 10 dpp testis
73	N/A	1	22020280	Mili IP	Mili_MiliDAH_1 E16.5 fetal testis
74	N/A	1	22020280	Mili IP	Mili_MiliDAH_2 E16.5 fetal testis
75	N/A	3	22020280	Mili IP	Miwi2DAH_1 E16.5 fetal testis
79	N/A	2	22020280	Mili IP	Miwi2-/-_1 E16.5 fetal testis
114	GSM958035	4	22902560	Mili IP	Fkbp6 +/-,P0,testis
116	GSM958037	1	22902560	Mili IP	Fkbp6 +/-,P10,testis
121	GSM545783	1981	20534472	Mov10L1 IP	wild type adult testis
126	GSM466728	350	20059948	Mili IP	Tdrd9+/- 14dpp testis
129	GSM466729	382	20059948	Mili IP	Tdrd9+/- 14dpp testis
130	GSM466730	1	20059948	Mili IP	Tdrd9-/- 14dpp testis
132	GSM475279	16	20022248	Miwi IP	adult testis
133	GSM475280	665	20022248	Mili IP	adult testis
217	GSM1653802	1	25582079	MIWI CLIP	round spermatids
224	GSM1528806	1	26588211	small RNA	10dpp testes
225	GSM1528807	122	26588211	small RNA	Adult testes Asb1 ao31(Het)
226	GSM1528808	238	26588211	small RNA	Adult testes Asb1 ao32(KO)
227	GSM1528809	238	26588211	small RNA	Adult testes Asb1 ao34(Het)
228	GSM1528810	246	26588211	small RNA	Adult testes Asb1 ao36(KO)
234	GSM433288	79	26115953	small RNA	18dpp hetero tdrd6 KO testes
235	GSM433289	160	26115953	small RNA	18dpp homo tdrd6 KO testes
236	GSM433290	81	26115953	small RNA	25dpp hetero tdrd6 KO testes
237	GSM433291	41	26115953	small RNA	25dpp homo tdrd6 KO testes
345	GSM475279	16	20022248	Miwi-IP	testis
346	GSM475280	665	20022248	Mili-IP	testis
347	GSM475281	118	20022248	small RNA	testis
441	GSM1096582	105	23523368	small RNA	Wild Type 10.5 dpp testes
443	GSM1096583	293	23523368	small RNA	Wild Type 12.5 dpp testes
444	GSM1096600	287	23523368	oxidized small RNA	Wild Type 12.5 dpp testes
445	GSM1096584	342	23523368	small RNA	Wild Type 14.5 dpp testes
446	GSM1096601	818	23523368	oxidized small RNA	Wild Type 14.5 dpp testes
447	GSM1096585	51	23523368	small RNA	Wild Type 17.5 dpp testes
448	GSM1096602	365	23523368	oxidized small RNA	Wild Type 17.5 dpp testes
449	GSM1096586	481	23523368	small RNA	Wild Type 20.5 dpp testes
450	GSM1096603	1496	23523368	oxidized small RNA	Wild Type 20.5 dpp testes
451	GSM1096587	334	23523368	small RNA	Wild Type 6 weeks dpp testes
452	GSM1096604	996	23523368	oxidized small RNA	Wild Type 6 weeks dpp testes

1 best hit(s) with 0 mismatch(es) in GRCm38

No.	Location	Gene	RepeatMaker
Location 1	17:27304696-27304721:-		SINE MIR MIR;

PubMed	16751777	Journal	Nature. 2006 Jul 13;442(7099):203-7.
Title	A novel class of small RNAs bind to MILI protein in mouse testes
Authors	Aravin A, Gaidatzis D, Pfeffer S, Lagos-Quintana M, Landgraf P, Iovino N, Morris P, Brownstein MJ, Kuramochi-Miyagawa S, Nakano T, Chien M, Russo JJ, Ju J, Sheridan R, Sander C, Zavolan M, Tuschl T.

PubMed	16778019	Journal	Science. 2006 Jul 21;313(5785):363-7.
Title	Characterization of the piRNA complex from rat testes.
Authors	Lau NC, Seto AG, Kim J, Kuramochi-Miyagawa S, Nakano T, Bartel DP, Kingston RE.

PubMed	22121019	Journal	Nature. 2011 Nov 27;480(7376):264-7.
Title	Miwi catalysis is required for piRNA amplification-independent LINE1 transposon silencing.
Authors	Reuter M, Berninger P, Chuma S, Shah H, Hosokawa M, Funaya C, Antony C, Sachidanandam R, Pillai RS.

PubMed	22842725	Journal	Nat Struct Mol Biol. 2012 Aug;19(8):773-81.
Title	Mili and Miwi target RNA repertoire reveals piRNA biogenesis and function of Miwi in spermiogenesis.
Authors	Vourekas A, Zheng Q, Alexiou P, Maragkakis M, Kirino Y, Gregory BD, Mourelatos Z.

PubMed	21602304	Journal	RNA. 2011 Jul;17(7):1191-203.
Title	piRNA profiling during specific stages of mouse spermatogenesis.
Authors	Gan H, Lin X, Zhang Z, Zhang W, Liao S, Wang L, Han C.

PubMed	20439430	Journal	Genes Dev. 2010 May;24(9):887-92.
Title	MVH in piRNA processing and gene silencing of retrotransposons.
Authors	Kuramochi-Miyagawa S, Watanabe T, Gotoh K, Takamatsu K, Chuma S, Kojima-Kita K, Shiromoto Y, Asada N, Toyoda A, Fujiyama A, Totoki Y, Shibata T, Kimura T, Nakatsuji N, Noce T, Sasaki H, Nakano T.

PubMed	22020280	Journal	Nature. 2011 Oct 23;480(7376):259-63.
Title	The endonuclease activity of Mili fuels piRNA amplification that silences LINE1 elements.
Authors	De Fazio S, Bartonicek N, Di Giacomo M, Abreu-Goodger C, Sankar A, Funaya C, Antony C, Moreira PN, Enright AJ, O'Carroll D.

PubMed	22902560	Journal	Mol Cell. 2012 Sep 28;47(6):970-9.
Title	A role for Fkbp6 and the chaperone machinery in piRNA amplification and transposon silencing.
Authors	Xiol J, Cora E, Koglgruber R, Chuma S, Subramanian S, Hosokawa M, Reuter M, Yang Z, Berninger P, Palencia A, Benes V, Penninger J, Sachidanandam R, Pillai RS.

PubMed	20534472	Journal	Proc Natl Acad Sci U S A. 2010 Jun 29;107(26):11841-6.
Title	Mouse MOV10L1 associates with Piwi proteins and is an essential component of the Piwi-interacting RNA (piRNA) pathway.
Authors	Zheng K, Xiol J, Reuter M, Eckardt S, Leu NA, McLaughlin KJ, Stark A, Sachidanandam R, Pillai RS, Wang PJ.

PubMed	20059948	Journal	Dev Cell. 2009 Dec;17(6):775-87.
Title	The TDRD9-MIWI2 complex is essential for piRNA-mediated retrotransposon silencing in the mouse male germline.
Authors	Shoji M, Tanaka T, Hosokawa M, Reuter M, Stark A, Kato Y, Kondoh G, Okawa K, Chujo T, Suzuki T, Hata K, Martin SL, Noce T, Kuramochi-Miyagawa S, Nakano T, Sasaki H, Pillai RS, Nakatsuji N, Chuma S.

PubMed	20022248	Journal	Curr Biol. 2009 Dec 29;19(24):2066-76.
Title	A broadly conserved pathway generates 3'UTR-directed primary piRNAs.
Authors	Robine N, Lau NC, Balla S, Jin Z, Okamura K, Kuramochi-Miyagawa S, Blower MD, Lai EC.

PubMed	25582079	Journal	Cell Res. 2015 Feb;25(2):193-207.
Title	MIWI and piRNA-mediated cleavage of messenger RNAs in mouse testes.
Authors	Zhang P, Kang JY, Gou LT, Wang J, Xue Y, Skogerboe G, Dai P, Huang DW, Chen R, Fu XD, Liu MF, He S.

PubMed	26588211	Journal	PLoS Genet. 2015 Nov 20;11(11):e1005652
Title	Conserved piRNA Expression from a Distinct Set of piRNA Cluster Loci in Eutherian Mammals
Authors	Chirn GW,Rahman R,Sytnikova YA,Matts JA,Zeng M,Gerlach D,Yu M,Berger B,Naramura M, Kile BT,Lau NC.

PubMed	26115953	Journal	Genes Dev. 2015 Jul 1; 29(13): 1403?415
Title	RNF17 blocks promiscuous activity of PIWI proteins in mouse testes
Authors	Wasik KA, Tam OH, Knott SR, Falciatori I, Hammell M, Vagin VV, Hannon GJ

PubMed	23523368	Journal	Mol Cell. 2013 Apr 11;50(1):67-81. doi: 10.1016/j.molcel.2013.02.016.
Title	An ancient transcription factor initiates the burst of piRNA production during early meiosis in mouse testes
Authors	Li XZ, Roy CK, Dong X, Bolcun-Filas E et al.