Detail Information of piRNA: piR-mmu-88

Dataset	Accession	Reads	PubMed	Method	Tissue
4	N/A	N/A	16751776	small RNA	testis
6	GSM113695	1	16778019	Chromatography	testes tissue from Swiss Webster male mice, 8-10 weeks old
11	GSM822760	5	22121019	Miwi IP	Testes, C57BL/6 Adult Miwi +/+
13	GSM822759	2	22121019	Miwi IP	Testes, C57BL/6 P20 Miwi +/+
31	GSM684624	67	22842725	Miwi CLIP	C57BL/6 adult testis
32	GSM684625	9	22842725	Miwi CLIP	C57BL/6 adult testis
217	GSM1653802	12	25582079	MIWI CLIP	round spermatids
225	GSM1528807	8	26588211	small RNA	Adult testes Asb1 ao31(Het)
226	GSM1528808	25	26588211	small RNA	Adult testes Asb1 ao32(KO)
227	GSM1528809	36	26588211	small RNA	Adult testes Asb1 ao34(Het)
228	GSM1528810	27	26588211	small RNA	Adult testes Asb1 ao36(KO)
234	GSM433288	2	26115953	small RNA	18dpp hetero tdrd6 KO testes
235	GSM433289	1	26115953	small RNA	18dpp homo tdrd6 KO testes
236	GSM433290	19	26115953	small RNA	25dpp hetero tdrd6 KO testes
237	GSM433291	5	26115953	small RNA	25dpp homo tdrd6 KO testes
441	GSM1096582	1	23523368	small RNA	Wild Type 10.5 dpp testes
447	GSM1096585	2	23523368	small RNA	Wild Type 17.5 dpp testes
448	GSM1096602	9	23523368	oxidized small RNA	Wild Type 17.5 dpp testes
449	GSM1096586	3	23523368	small RNA	Wild Type 20.5 dpp testes
450	GSM1096603	6	23523368	oxidized small RNA	Wild Type 20.5 dpp testes
451	GSM1096587	10	23523368	small RNA	Wild Type 6 weeks dpp testes
452	GSM1096604	32	23523368	oxidized small RNA	Wild Type 6 weeks dpp testes

2 best hit(s) with 0 mismatch(es) in GRCm38

No.	Location	Gene	RepeatMaker
Location 1	10:22053423-22053454:-	Gm18637 ENSMUST00000217665;	LTR ERVL-MaLR MTA_Mm; LINE L1 Lx;
Location 2	6:128188054-128188085:-	Gm18609 ENSMUST00000203370; Gm10010 ENSMUST00000071101;

PubMed	16751776	Journal	Nature. 2006 Jul 13;442(7099):199-202.
Title	A germline-specific class of small RNAs binds mammalian Piwi proteins
Authors	Girard A, Sachidanandam R, Hannon GJ, Carmell MA.

PubMed	16778019	Journal	Science. 2006 Jul 21;313(5785):363-7.
Title	Characterization of the piRNA complex from rat testes.
Authors	Lau NC, Seto AG, Kim J, Kuramochi-Miyagawa S, Nakano T, Bartel DP, Kingston RE.

PubMed	22121019	Journal	Nature. 2011 Nov 27;480(7376):264-7.
Title	Miwi catalysis is required for piRNA amplification-independent LINE1 transposon silencing.
Authors	Reuter M, Berninger P, Chuma S, Shah H, Hosokawa M, Funaya C, Antony C, Sachidanandam R, Pillai RS.

PubMed	22842725	Journal	Nat Struct Mol Biol. 2012 Aug;19(8):773-81.
Title	Mili and Miwi target RNA repertoire reveals piRNA biogenesis and function of Miwi in spermiogenesis.
Authors	Vourekas A, Zheng Q, Alexiou P, Maragkakis M, Kirino Y, Gregory BD, Mourelatos Z.

PubMed	25582079	Journal	Cell Res. 2015 Feb;25(2):193-207.
Title	MIWI and piRNA-mediated cleavage of messenger RNAs in mouse testes.
Authors	Zhang P, Kang JY, Gou LT, Wang J, Xue Y, Skogerboe G, Dai P, Huang DW, Chen R, Fu XD, Liu MF, He S.

PubMed	26588211	Journal	PLoS Genet. 2015 Nov 20;11(11):e1005652
Title	Conserved piRNA Expression from a Distinct Set of piRNA Cluster Loci in Eutherian Mammals
Authors	Chirn GW,Rahman R,Sytnikova YA,Matts JA,Zeng M,Gerlach D,Yu M,Berger B,Naramura M, Kile BT,Lau NC.

PubMed	26115953	Journal	Genes Dev. 2015 Jul 1; 29(13): 1403?415
Title	RNF17 blocks promiscuous activity of PIWI proteins in mouse testes
Authors	Wasik KA, Tam OH, Knott SR, Falciatori I, Hammell M, Vagin VV, Hannon GJ

PubMed	23523368	Journal	Mol Cell. 2013 Apr 11;50(1):67-81. doi: 10.1016/j.molcel.2013.02.016.
Title	An ancient transcription factor initiates the burst of piRNA production during early meiosis in mouse testes
Authors	Li XZ, Roy CK, Dong X, Bolcun-Filas E et al.