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Detail Information of piRNA: piR-mmu-66061

General Information
piRBase Id piR-mmu-66061 Accession DQ569746
Organism Mouse Number of methods 3
Sequence TCATCTTTCATGAAGGTTCAGTGTCCTAGT Number of papers 9
Length 30 Golden piRNA Y
Aliases piR-9834; PIR30857;
Datasets
Dataset Accession Reads PubMed Method Tissue
4 N/A N/A 16751776 small RNA testis
12 GSM822758 3 22121019 Miwi IP Testes, C57BL/6 P14 Miwi +/+
13 GSM822759 2 22121019 Miwi IP Testes, C57BL/6 P20 Miwi +/+
16 GSM822763 1 22121019 Miwi IP Testes, C57BL/6 Adult Miwi -/ADH
61 GSM319957 13 18922463 Miwi2 IP 16.5 dpc testis
62 GSM319958 31 18922463 small RNA 4-6 week ovary
71 GSM509280 13 20439430 small RNA MitoPLD-/- 10 dpp testis
116 GSM958037 6 22902560 Mili IP Fkbp6 +/-,P10,testis
117 GSM958038 4 22902560 Mili IP Fkbp6 -/-,P10,testis
224 GSM1528806 79 26588211 small RNA 10dpp testes
225 GSM1528807 49 26588211 small RNA Adult testes Asb1 ao31(Het)
226 GSM1528808 86 26588211 small RNA Adult testes Asb1 ao32(KO)
227 GSM1528809 108 26588211 small RNA Adult testes Asb1 ao34(Het)
228 GSM1528810 104 26588211 small RNA Adult testes Asb1 ao36(KO)
234 GSM433288 28 26115953 small RNA 18dpp hetero tdrd6 KO testes
235 GSM433289 30 26115953 small RNA 18dpp homo tdrd6 KO testes
236 GSM433290 36 26115953 small RNA 25dpp hetero tdrd6 KO testes
237 GSM433291 13 26115953 small RNA 25dpp homo tdrd6 KO testes
240 GSM433294 4 26115953 small RNA 18.5dpc hetero tdrd1 KO testes
360 GSM2500212 N/A 31358756 samll RNA(CAS-seq) oocyte(age: 8 to 10 weeks old, female mice; B6D2F1)
361 GSM2500213 N/A 31358756 samll RNA(CAS-seq) oocyte(age: 8 to 10 weeks old, female mice; B6D2F1)
362 GSM2500214 N/A 31358756 samll RNA(CAS-seq) oocyte(age: 8 to 10 weeks old, female mice; B6D2F1)
363 GSM2500215 N/A 31358756 samll RNA(CAS-seq) oocyte(age: 8 to 10 weeks old, female mice; B6D2F1)
364 GSM2500216 N/A 31358756 samll RNA(CAS-seq) oocyte(age: 8 to 10 weeks old, female mice; B6D2F1)
365 GSM2500217 N/A 31358756 samll RNA(CAS-seq) oocyte(age: 8 to 10 weeks old, female mice; B6D2F1)
441 GSM1096582 2 23523368 small RNA Wild Type 10.5 dpp testes
442 GSM1096599 246 23523368 oxidized small RNA Wild Type 10.5 dpp testes
443 GSM1096583 96 23523368 small RNA Wild Type 12.5 dpp testes
444 GSM1096600 375 23523368 oxidized small RNA Wild Type 12.5 dpp testes
445 GSM1096584 98 23523368 small RNA Wild Type 14.5 dpp testes
446 GSM1096601 542 23523368 oxidized small RNA Wild Type 14.5 dpp testes
447 GSM1096585 13 23523368 small RNA Wild Type 17.5 dpp testes
448 GSM1096602 7 23523368 oxidized small RNA Wild Type 17.5 dpp testes
449 GSM1096586 43 23523368 small RNA Wild Type 20.5 dpp testes
450 GSM1096603 11 23523368 oxidized small RNA Wild Type 20.5 dpp testes
451 GSM1096587 13 23523368 small RNA Wild Type 6 weeks dpp testes
452 GSM1096604 2 23523368 oxidized small RNA Wild Type 6 weeks dpp testes
Location in GRCm38
1194 best hit(s) with 0 mismatch(es) in GRCm38
No. Location Gene RepeatMaker
Location 1 12:62538637-62538667:+
Hits not all shown! To search for more loci, you can Run Bowtie here or Blat in UCSC
piRNA Expression
Sample CPM
GSM179088 0
GSM261957 0
GSM261958 75.6303
GSM261959 3.7548
GSM319953 0
GSM319954 0
GSM319955 0
GSM319956 0
GSM319957 6.7
GSM319958 49.9518
GSM319959 0
GSM319960 0
GSM319961 0
GSM400967 0
Sample CPM
GSM400968 0
GSM400969 0
GSM433288 6.5573
GSM433289 6.5622
GSM433290 7.6455
GSM433291 4.6245
GSM433292 1.945
GSM433293 4.2538
GSM433294 0.9386
GSM433295 0
GSM475279 0
GSM475280 0
GSM475281 0
GSM678422 0
The Expression of piRNA: piR-mmu-66061
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P value calculation
Sample1
Sample2
Target mRNA
No record.
Target lncRNA
No record.
Target Network
No record.
Disease Information
No record.
Reference
PubMed 16751776 Journal Nature. 2006 Jul 13;442(7099):199-202.
Title A germline-specific class of small RNAs binds mammalian Piwi proteins
Authors Girard A, Sachidanandam R, Hannon GJ, Carmell MA.
PubMed 22121019 Journal Nature. 2011 Nov 27;480(7376):264-7.
Title Miwi catalysis is required for piRNA amplification-independent LINE1 transposon silencing.
Authors Reuter M, Berninger P, Chuma S, Shah H, Hosokawa M, Funaya C, Antony C, Sachidanandam R, Pillai RS.
PubMed 18922463 Journal Mol Cell. 2008 Sep 26;31(6):785-99.
Title A piRNA pathway primed by individual transposons is linked to de novo DNA methylation in mice.
Authors Aravin AA, Sachidanandam R, Bourc'his D, Schaefer C, Pezic D, Toth KF, Bestor T, Hannon GJ.
PubMed 20439430 Journal Genes Dev. 2010 May;24(9):887-92.
Title MVH in piRNA processing and gene silencing of retrotransposons.
Authors Kuramochi-Miyagawa S, Watanabe T, Gotoh K, Takamatsu K, Chuma S, Kojima-Kita K, Shiromoto Y, Asada N, Toyoda A, Fujiyama A, Totoki Y, Shibata T, Kimura T, Nakatsuji N, Noce T, Sasaki H, Nakano T.
PubMed 22902560 Journal Mol Cell. 2012 Sep 28;47(6):970-9.
Title A role for Fkbp6 and the chaperone machinery in piRNA amplification and transposon silencing.
Authors Xiol J, Cora E, Koglgruber R, Chuma S, Subramanian S, Hosokawa M, Reuter M, Yang Z, Berninger P, Palencia A, Benes V, Penninger J, Sachidanandam R, Pillai RS.
PubMed 26588211 Journal PLoS Genet. 2015 Nov 20;11(11):e1005652
Title Conserved piRNA Expression from a Distinct Set of piRNA Cluster Loci in Eutherian Mammals
Authors Chirn GW,Rahman R,Sytnikova YA,Matts JA,Zeng M,Gerlach D,Yu M,Berger B,Naramura M, Kile BT,Lau NC.
PubMed 26115953 Journal Genes Dev. 2015 Jul 1; 29(13): 1403?415
Title RNF17 blocks promiscuous activity of PIWI proteins in mouse testes
Authors Wasik KA, Tam OH, Knott SR, Falciatori I, Hammell M, Vagin VV, Hannon GJ
PubMed 31358756 Journal Nat Commun. 2019 Jul 29;10(1):3389. doi: 10.1038/s41467-019-11312-8.
Title Single-cell CAS-seq reveals a class of short PIWI-interacting RNAs in human oocytes.
Authors Yang Q, Li R, Lyu Q, Hou L, Liu Z, Sun Q, Liu M, Shi H, Xu B, Yin M, Yan Z,Huang Y, Liu M, Li Y, Wu L.
PubMed 23523368 Journal Mol Cell. 2013 Apr 11;50(1):67-81. doi: 10.1016/j.molcel.2013.02.016.
Title An ancient transcription factor initiates the burst of piRNA production during early meiosis in mouse testes
Authors Li XZ, Roy CK, Dong X, Bolcun-Filas E et al.