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piRBase Id | piR-mmu-630526 | Accession | N/A |
---|---|---|---|
Organism | Mouse | Number of methods | 3 |
Sequence | AATACATCTAGTTGTATCTGGACAAGATCT | Number of papers | 12 |
Length | 30 | Golden piRNA | - |
Aliases | N/A |
Dataset | Accession | Reads | PubMed | Method | Tissue |
---|---|---|---|---|---|
12 | GSM822758 | 4 | 22121019 | Miwi IP | Testes, C57BL/6 P14 Miwi +/+ |
13 | GSM822759 | 2 | 22121019 | Miwi IP | Testes, C57BL/6 P20 Miwi +/+ |
14 | GSM822761 | 1 | 22121019 | Miwi IP | Testes, C57BL/6 Adult Miwi +/ADH |
16 | GSM822763 | 1 | 22121019 | Miwi IP | Testes, C57BL/6 Adult Miwi -/ADH |
59 | GSM319955 | 5 | 18922463 | small RNA | 16.5 dpc testis |
61 | GSM319957 | 14 | 18922463 | Miwi2 IP | 16.5 dpc testis |
66 | GSM509275 | 1 | 20439430 | small RNA | MitoPLD+/+ E16.5 testis |
69 | GSM509278 | 10 | 20439430 | small RNA | Miwi2-/- E16.5 testis |
73 | N/A | 1 | 22020280 | Mili IP | Mili_MiliDAH_1 E16.5 fetal testis |
74 | N/A | 1 | 22020280 | Mili IP | Mili_MiliDAH_2 E16.5 fetal testis |
75 | N/A | 23 | 22020280 | Mili IP | Miwi2DAH_1 E16.5 fetal testis |
76 | N/A | 9 | 22020280 | Mili IP | Miwi2DAH_2 E16.5 fetal testis |
77 | N/A | 4 | 22020280 | Mili IP | Miwi2+/-_1 E16.5 fetal testis |
78 | N/A | 7 | 22020280 | Mili IP | Miwi2+/-_2 E16.5 fetal testis |
79 | N/A | 2 | 22020280 | Mili IP | Miwi2-/-_1 E16.5 fetal testis |
81 | N/A | 71 | 22020280 | Mili IP | wild_type_1 E16.5 fetal testis |
82 | N/A | 6 | 22020280 | Mili IP | wild_type_2 E16.5 fetal testis |
83 | N/A | 6 | 22020280 | Miwi2 IP | MiliDAH_1 E16.5 fetal testis |
84 | N/A | 11 | 22020280 | Miwi2 IP | MiliDAH_2 E16.5 fetal testis |
85 | N/A | 28 | 22020280 | Miwi2 IP | Miwi2DAH_1 E16.5 fetal testis |
86 | N/A | 86 | 22020280 | Miwi2 IP | Miwi2DAH_2 E16.5 fetal testis |
87 | N/A | 30 | 22020280 | Miwi2 IP | wild_type_1 E16.5 fetal testis |
88 | N/A | 34 | 22020280 | Miwi2 IP | wild_type_2 E16.5 fetal testis |
116 | GSM958037 | 3 | 22902560 | Mili IP | Fkbp6 +/-,P10,testis |
120 | GSM958041 | 3 | 22902560 | Miwi2 IP | Tdrd1 +/-,E18,testis |
133 | GSM475280 | 1 | 20022248 | Mili IP | adult testis |
225 | GSM1528807 | 10 | 26588211 | small RNA | Adult testes Asb1 ao31(Het) |
226 | GSM1528808 | 16 | 26588211 | small RNA | Adult testes Asb1 ao32(KO) |
227 | GSM1528809 | 10 | 26588211 | small RNA | Adult testes Asb1 ao34(Het) |
228 | GSM1528810 | 5 | 26588211 | small RNA | Adult testes Asb1 ao36(KO) |
234 | GSM433288 | 7 | 26115953 | small RNA | 18dpp hetero tdrd6 KO testes |
235 | GSM433289 | 1 | 26115953 | small RNA | 18dpp homo tdrd6 KO testes |
236 | GSM433290 | 3 | 26115953 | small RNA | 25dpp hetero tdrd6 KO testes |
237 | GSM433291 | 4 | 26115953 | small RNA | 25dpp homo tdrd6 KO testes |
238 | GSM433292 | 2 | 26115953 | small RNA | 6 weeks hetero tdrd6 KO testes |
240 | GSM433294 | 6 | 26115953 | small RNA | 18.5dpc hetero tdrd1 KO testes |
246 | GSM1318059 | 10 | 25262350 | small RNA | E16.5 whole testes |
247 | GSM1318060 | 7 | 25262350 | small RNA | E16.5 whole testes Hsp90-alpha KO |
346 | GSM475280 | 1 | 20022248 | Mili-IP | testis |
348 | GSM3772906 | 108 | 32674113 | small RNA | E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; control) |
349 | GSM3772907 | 78 | 32674113 | small RNA | E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; control) |
350 | GSM3772908 | 360 | 32674113 | small RNA | E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; control) |
351 | GSM3772909 | 496 | 32674113 | small RNA | E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; Spocd1-/-) |
352 | GSM3772910 | 598 | 32674113 | small RNA | E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; Spocd1-/-) |
353 | GSM3772911 | 633 | 32674113 | small RNA | E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; Spocd1-/-) |
358 | GSM4635231 | 1 | 33184219 | small RNA | primordial germ cells(age: E13.5; sex: male; treat: ionizing radiation) |
441 | GSM1096582 | 6 | 23523368 | small RNA | Wild Type 10.5 dpp testes |
443 | GSM1096583 | 80 | 23523368 | small RNA | Wild Type 12.5 dpp testes |
445 | GSM1096584 | 127 | 23523368 | small RNA | Wild Type 14.5 dpp testes |
446 | GSM1096601 | 72 | 23523368 | oxidized small RNA | Wild Type 14.5 dpp testes |
447 | GSM1096585 | 21 | 23523368 | small RNA | Wild Type 17.5 dpp testes |
448 | GSM1096602 | 3 | 23523368 | oxidized small RNA | Wild Type 17.5 dpp testes |
449 | GSM1096586 | 16 | 23523368 | small RNA | Wild Type 20.5 dpp testes |
450 | GSM1096603 | 1 | 23523368 | oxidized small RNA | Wild Type 20.5 dpp testes |
451 | GSM1096587 | 9 | 23523368 | small RNA | Wild Type 6 weeks dpp testes |
No. | Location | Gene | RepeatMaker |
---|---|---|---|
Location 1 | 16:22981923-22981953:- | LINE L1 L1_Mur3; | |
Hits not all shown! To search for more loci, you can Run Bowtie here or Blat in UCSC |
Sample | CPM |
---|---|
GSM179088 | 0 |
GSM261957 | 0 |
GSM261958 | 0 |
GSM261959 | 0 |
GSM319953 | 0 |
GSM319954 | 0 |
GSM319955 | 3.0341 |
GSM319956 | 0 |
GSM319957 | 7.2153 |
GSM319958 | 0 |
GSM319959 | 0 |
GSM319960 | 0 |
GSM319961 | 0 |
GSM400967 | 0 |
Sample | CPM |
---|---|
GSM400968 | 0 |
GSM400969 | 0 |
GSM433288 | 1.6393 |
GSM433289 | 0.2187 |
GSM433290 | 0.6371 |
GSM433291 | 1.4229 |
GSM433292 | 0.4863 |
GSM433293 | 0.8508 |
GSM433294 | 1.4079 |
GSM433295 | 0.7135 |
GSM475279 | 0 |
GSM475280 | 0.0909 |
GSM475281 | 0 |
GSM678422 | 0 |
No record. |
No record. |
No record. |
No record. |
PubMed | 22121019 | Journal | Nature. 2011 Nov 27;480(7376):264-7. |
---|---|---|---|
Title | Miwi catalysis is required for piRNA amplification-independent LINE1 transposon silencing. | ||
Authors | Reuter M, Berninger P, Chuma S, Shah H, Hosokawa M, Funaya C, Antony C, Sachidanandam R, Pillai RS. |
PubMed | 18922463 | Journal | Mol Cell. 2008 Sep 26;31(6):785-99. |
---|---|---|---|
Title | A piRNA pathway primed by individual transposons is linked to de novo DNA methylation in mice. | ||
Authors | Aravin AA, Sachidanandam R, Bourc'his D, Schaefer C, Pezic D, Toth KF, Bestor T, Hannon GJ. |
PubMed | 20439430 | Journal | Genes Dev. 2010 May;24(9):887-92. |
---|---|---|---|
Title | MVH in piRNA processing and gene silencing of retrotransposons. | ||
Authors | Kuramochi-Miyagawa S, Watanabe T, Gotoh K, Takamatsu K, Chuma S, Kojima-Kita K, Shiromoto Y, Asada N, Toyoda A, Fujiyama A, Totoki Y, Shibata T, Kimura T, Nakatsuji N, Noce T, Sasaki H, Nakano T. |
PubMed | 22020280 | Journal | Nature. 2011 Oct 23;480(7376):259-63. |
---|---|---|---|
Title | The endonuclease activity of Mili fuels piRNA amplification that silences LINE1 elements. | ||
Authors | De Fazio S, Bartonicek N, Di Giacomo M, Abreu-Goodger C, Sankar A, Funaya C, Antony C, Moreira PN, Enright AJ, O'Carroll D. |
PubMed | 22902560 | Journal | Mol Cell. 2012 Sep 28;47(6):970-9. |
---|---|---|---|
Title | A role for Fkbp6 and the chaperone machinery in piRNA amplification and transposon silencing. | ||
Authors | Xiol J, Cora E, Koglgruber R, Chuma S, Subramanian S, Hosokawa M, Reuter M, Yang Z, Berninger P, Palencia A, Benes V, Penninger J, Sachidanandam R, Pillai RS. |
PubMed | 20022248 | Journal | Curr Biol. 2009 Dec 29;19(24):2066-76. |
---|---|---|---|
Title | A broadly conserved pathway generates 3'UTR-directed primary piRNAs. | ||
Authors | Robine N, Lau NC, Balla S, Jin Z, Okamura K, Kuramochi-Miyagawa S, Blower MD, Lai EC. |
PubMed | 26588211 | Journal | PLoS Genet. 2015 Nov 20;11(11):e1005652 |
---|---|---|---|
Title | Conserved piRNA Expression from a Distinct Set of piRNA Cluster Loci in Eutherian Mammals | ||
Authors | Chirn GW,Rahman R,Sytnikova YA,Matts JA,Zeng M,Gerlach D,Yu M,Berger B,Naramura M, Kile BT,Lau NC. |
PubMed | 26115953 | Journal | Genes Dev. 2015 Jul 1; 29(13): 1403?415 |
---|---|---|---|
Title | RNF17 blocks promiscuous activity of PIWI proteins in mouse testes | ||
Authors | Wasik KA, Tam OH, Knott SR, Falciatori I, Hammell M, Vagin VV, Hannon GJ |
PubMed | 25262350 | Journal | Nucleic Acids Res. 2014 Oct 29;42(19):11903-11 |
---|---|---|---|
Title | HSP90a plays an important role in piRNA biogenesis and retrotransposon repression in mouse. | ||
Authors | Ichiyanagi T,Ichiyanagi K,Ogawa A,Kuramochi-Miyagawa S,Nakano T,Chuma S,Sasaki H,Udono H. |
PubMed | 32674113 | Journal | Nature. 2020 Aug;584(7822):635-639. doi: 10.1038/s41586-020-2557-5. |
---|---|---|---|
Title | SPOCD1 is an essential executor of piRNA-directed de novo DNA methylation. | ||
Authors | Zoch A, Auchynnikava T, Berrens RV, Kabayama Y, Schöpp T, Heep M, Vasiliauskaitė L, Pérez-Rico YA, Cook AG, Shkumatava A, Rappsilber J, Allshire RC, O'Carroll D. |
PubMed | 33184219 | Journal | Genes Dev. 2020 Dec 1;34(23-24):1637-1649. doi: 10.1101/gad.341602.120. Epub 2020 Nov 12. |
---|---|---|---|
Title | Sexually dimorphic DNA damage responses and mutation avoidance in the mouse germline. | ||
Authors | Bloom JC, Schimenti JC. |
PubMed | 23523368 | Journal | Mol Cell. 2013 Apr 11;50(1):67-81. doi: 10.1016/j.molcel.2013.02.016. |
---|---|---|---|
Title | An ancient transcription factor initiates the burst of piRNA production during early meiosis in mouse testes | ||
Authors | Li XZ, Roy CK, Dong X, Bolcun-Filas E et al. |