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Detail Information of piRNA: piR-mmu-6178

General Information
piRBase Id piR-mmu-6178 Accession AB250988
Organism Mouse Number of methods 5
Sequence TGGGAAGCTTGTTGAGTTAGAGTGTCTCTC Number of papers 10
Length 30 Golden piRNA -
Aliases piR-21620; piR-100893; PIR15619; PIR194219; gsRNA18;
Datasets
Dataset Accession Reads PubMed Method Tissue
4 N/A N/A 16751776 small RNA testis
6 GSM113695 33 16778019 Chromatography testes tissue from Swiss Webster male mice, 8-10 weeks old
10 N/A N/A 16766680 small RNA testis
11 GSM822760 16 22121019 Miwi IP Testes, C57BL/6 Adult Miwi +/+
12 GSM822758 12 22121019 Miwi IP Testes, C57BL/6 P14 Miwi +/+
13 GSM822759 7 22121019 Miwi IP Testes, C57BL/6 P20 Miwi +/+
14 GSM822761 15 22121019 Miwi IP Testes, C57BL/6 Adult Miwi +/ADH
15 GSM822762 2 22121019 Miwi IP Testes, C57BL/6 Adult Miwi -/ADH
31 GSM684624 1698 22842725 Miwi CLIP C57BL/6 adult testis
32 GSM684625 388 22842725 Miwi CLIP C57BL/6 adult testis
33 GSM684626 163 22842725 Miwi CLIP C57BL/6 adult testis
34 GSM684627 311 22842725 Miwi CLIP C57BL/6 adult testis
57 GSM319953 1 18922463 Mili IP 10 dpp Dnmt3L heterozygotes testis
217 GSM1653802 42 25582079 MIWI CLIP round spermatids
225 GSM1528807 447 26588211 small RNA Adult testes Asb1 ao31(Het)
226 GSM1528808 678 26588211 small RNA Adult testes Asb1 ao32(KO)
227 GSM1528809 1158 26588211 small RNA Adult testes Asb1 ao34(Het)
228 GSM1528810 927 26588211 small RNA Adult testes Asb1 ao36(KO)
234 GSM433288 284 26115953 small RNA 18dpp hetero tdrd6 KO testes
235 GSM433289 338 26115953 small RNA 18dpp homo tdrd6 KO testes
236 GSM433290 422 26115953 small RNA 25dpp hetero tdrd6 KO testes
237 GSM433291 332 26115953 small RNA 25dpp homo tdrd6 KO testes
441 GSM1096582 21 23523368 small RNA Wild Type 10.5 dpp testes
443 GSM1096583 25 23523368 small RNA Wild Type 12.5 dpp testes
444 GSM1096600 6 23523368 oxidized small RNA Wild Type 12.5 dpp testes
445 GSM1096584 74 23523368 small RNA Wild Type 14.5 dpp testes
446 GSM1096601 66 23523368 oxidized small RNA Wild Type 14.5 dpp testes
447 GSM1096585 69 23523368 small RNA Wild Type 17.5 dpp testes
448 GSM1096602 66 23523368 oxidized small RNA Wild Type 17.5 dpp testes
449 GSM1096586 173 23523368 small RNA Wild Type 20.5 dpp testes
450 GSM1096603 171 23523368 oxidized small RNA Wild Type 20.5 dpp testes
451 GSM1096587 195 23523368 small RNA Wild Type 6 weeks dpp testes
452 GSM1096604 204 23523368 oxidized small RNA Wild Type 6 weeks dpp testes
Location in GRCm38
1 best hit(s) with 0 mismatch(es) in GRCm38
No. Location Gene RepeatMaker
Location 1 2:92569300-92569330:+ SINE Alu B1_Mus2;
piRNA Expression
Sample CPM
GSM179088 0
GSM261957 0
GSM261958 0
GSM261959 0
GSM319953 0.7538
GSM319954 0
GSM319955 0
GSM319956 0
GSM319957 0
GSM319958 0
GSM319959 0
GSM319960 0
GSM319961 0
GSM400967 0
Sample CPM
GSM400968 0
GSM400969 0
GSM433288 66.5097
GSM433289 73.9345
GSM433290 89.6217
GSM433291 118.1014
GSM433292 147.3357
GSM433293 102.9422
GSM433294 0
GSM433295 0
GSM475279 0
GSM475280 0
GSM475281 0
GSM678422 0
The Expression of piRNA: piR-mmu-6178
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P value calculation
Sample1
Sample2
Target mRNA
No record.
Target lncRNA
No record.
Target Network
No record.
Disease Information
No record.
Reference
PubMed 16751776 Journal Nature. 2006 Jul 13;442(7099):199-202.
Title A germline-specific class of small RNAs binds mammalian Piwi proteins
Authors Girard A, Sachidanandam R, Hannon GJ, Carmell MA.
PubMed 16778019 Journal Science. 2006 Jul 21;313(5785):363-7.
Title Characterization of the piRNA complex from rat testes.
Authors Lau NC, Seto AG, Kim J, Kuramochi-Miyagawa S, Nakano T, Bartel DP, Kingston RE.
PubMed 16766680 Journal Genes Dev. 2006 Jul 1;20(13):1709-14.
Title A novel class of small RNAs in mouse spermatogenic cells.
Authors Grivna ST, Beyret E, Wang Z, Lin H.
PubMed 22121019 Journal Nature. 2011 Nov 27;480(7376):264-7.
Title Miwi catalysis is required for piRNA amplification-independent LINE1 transposon silencing.
Authors Reuter M, Berninger P, Chuma S, Shah H, Hosokawa M, Funaya C, Antony C, Sachidanandam R, Pillai RS.
PubMed 22842725 Journal Nat Struct Mol Biol. 2012 Aug;19(8):773-81.
Title Mili and Miwi target RNA repertoire reveals piRNA biogenesis and function of Miwi in spermiogenesis.
Authors Vourekas A, Zheng Q, Alexiou P, Maragkakis M, Kirino Y, Gregory BD, Mourelatos Z.
PubMed 18922463 Journal Mol Cell. 2008 Sep 26;31(6):785-99.
Title A piRNA pathway primed by individual transposons is linked to de novo DNA methylation in mice.
Authors Aravin AA, Sachidanandam R, Bourc'his D, Schaefer C, Pezic D, Toth KF, Bestor T, Hannon GJ.
PubMed 25582079 Journal Cell Res. 2015 Feb;25(2):193-207.
Title MIWI and piRNA-mediated cleavage of messenger RNAs in mouse testes.
Authors Zhang P, Kang JY, Gou LT, Wang J, Xue Y, Skogerboe G, Dai P, Huang DW, Chen R, Fu XD, Liu MF, He S.
PubMed 26588211 Journal PLoS Genet. 2015 Nov 20;11(11):e1005652
Title Conserved piRNA Expression from a Distinct Set of piRNA Cluster Loci in Eutherian Mammals
Authors Chirn GW,Rahman R,Sytnikova YA,Matts JA,Zeng M,Gerlach D,Yu M,Berger B,Naramura M, Kile BT,Lau NC.
PubMed 26115953 Journal Genes Dev. 2015 Jul 1; 29(13): 1403?415
Title RNF17 blocks promiscuous activity of PIWI proteins in mouse testes
Authors Wasik KA, Tam OH, Knott SR, Falciatori I, Hammell M, Vagin VV, Hannon GJ
PubMed 23523368 Journal Mol Cell. 2013 Apr 11;50(1):67-81. doi: 10.1016/j.molcel.2013.02.016.
Title An ancient transcription factor initiates the burst of piRNA production during early meiosis in mouse testes
Authors Li XZ, Roy CK, Dong X, Bolcun-Filas E et al.