Detail Information of piRNA: piR-mmu-5855

Dataset	Accession	Reads	PubMed	Method	Tissue
4	N/A	N/A	16751776	small RNA	testis
12	GSM822758	1	22121019	Miwi IP	Testes, C57BL/6 P14 Miwi +/+
51	GSM610966	6	21602304	small RNA	Male germ cell, Pachytene spermatocytes
61	GSM319957	1	18922463	Miwi2 IP	16.5 dpc testis
66	GSM509275	1	20439430	small RNA	MitoPLD+/+ E16.5 testis
115	GSM958036	20	22902560	Mili IP	Fkbp6 -/-,P0,testis
116	GSM958037	8	22902560	Mili IP	Fkbp6 +/-,P10,testis
117	GSM958038	5	22902560	Mili IP	Fkbp6 -/-,P10,testis
119	GSM958040	3	22902560	Mili IP	Tdrd1 -/-,E18,testis
120	GSM958041	25	22902560	Miwi2 IP	Tdrd1 +/-,E18,testis
348	GSM3772906	6	32674113	small RNA	E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; control)
349	GSM3772907	1	32674113	small RNA	E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; control)
350	GSM3772908	5	32674113	small RNA	E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; control)
351	GSM3772909	1	32674113	small RNA	E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; Spocd1-/-)
352	GSM3772910	2	32674113	small RNA	E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; Spocd1-/-)
365	GSM2500217	N/A	31358756	samll RNA(CAS-seq)	oocyte(age: 8 to 10 weeks old, female mice; B6D2F1)
442	GSM1096599	74	23523368	oxidized small RNA	Wild Type 10.5 dpp testes
443	GSM1096583	6	23523368	small RNA	Wild Type 12.5 dpp testes
444	GSM1096600	31	23523368	oxidized small RNA	Wild Type 12.5 dpp testes
445	GSM1096584	1	23523368	small RNA	Wild Type 14.5 dpp testes
446	GSM1096601	19	23523368	oxidized small RNA	Wild Type 14.5 dpp testes

2032 best hit(s) with 0 mismatch(es) in GRCm38

No.	Location	Gene	RepeatMaker
Location 1	3:112266537-112266566:+		LINE L1 Lx2;
Hits not all shown! To search for more loci, you can Run Bowtie here or Blat in UCSC

PubMed	16751776	Journal	Nature. 2006 Jul 13;442(7099):199-202.
Title	A germline-specific class of small RNAs binds mammalian Piwi proteins
Authors	Girard A, Sachidanandam R, Hannon GJ, Carmell MA.

PubMed	22121019	Journal	Nature. 2011 Nov 27;480(7376):264-7.
Title	Miwi catalysis is required for piRNA amplification-independent LINE1 transposon silencing.
Authors	Reuter M, Berninger P, Chuma S, Shah H, Hosokawa M, Funaya C, Antony C, Sachidanandam R, Pillai RS.

PubMed	21602304	Journal	RNA. 2011 Jul;17(7):1191-203.
Title	piRNA profiling during specific stages of mouse spermatogenesis.
Authors	Gan H, Lin X, Zhang Z, Zhang W, Liao S, Wang L, Han C.

PubMed	18922463	Journal	Mol Cell. 2008 Sep 26;31(6):785-99.
Title	A piRNA pathway primed by individual transposons is linked to de novo DNA methylation in mice.
Authors	Aravin AA, Sachidanandam R, Bourc'his D, Schaefer C, Pezic D, Toth KF, Bestor T, Hannon GJ.

PubMed	20439430	Journal	Genes Dev. 2010 May;24(9):887-92.
Title	MVH in piRNA processing and gene silencing of retrotransposons.
Authors	Kuramochi-Miyagawa S, Watanabe T, Gotoh K, Takamatsu K, Chuma S, Kojima-Kita K, Shiromoto Y, Asada N, Toyoda A, Fujiyama A, Totoki Y, Shibata T, Kimura T, Nakatsuji N, Noce T, Sasaki H, Nakano T.

PubMed	22902560	Journal	Mol Cell. 2012 Sep 28;47(6):970-9.
Title	A role for Fkbp6 and the chaperone machinery in piRNA amplification and transposon silencing.
Authors	Xiol J, Cora E, Koglgruber R, Chuma S, Subramanian S, Hosokawa M, Reuter M, Yang Z, Berninger P, Palencia A, Benes V, Penninger J, Sachidanandam R, Pillai RS.

PubMed	32674113	Journal	Nature. 2020 Aug;584(7822):635-639. doi: 10.1038/s41586-020-2557-5.
Title	SPOCD1 is an essential executor of piRNA-directed de novo DNA methylation.
Authors	Zoch A, Auchynnikava T, Berrens RV, Kabayama Y, Schöpp T, Heep M, Vasiliauskaitė L, Pérez-Rico YA, Cook AG, Shkumatava A, Rappsilber J, Allshire RC, O'Carroll D.

PubMed	31358756	Journal	Nat Commun. 2019 Jul 29;10(1):3389. doi: 10.1038/s41467-019-11312-8.
Title	Single-cell CAS-seq reveals a class of short PIWI-interacting RNAs in human oocytes.
Authors	Yang Q, Li R, Lyu Q, Hou L, Liu Z, Sun Q, Liu M, Shi H, Xu B, Yin M, Yan Z,Huang Y, Liu M, Li Y, Wu L.

PubMed	23523368	Journal	Mol Cell. 2013 Apr 11;50(1):67-81. doi: 10.1016/j.molcel.2013.02.016.
Title	An ancient transcription factor initiates the burst of piRNA production during early meiosis in mouse testes
Authors	Li XZ, Roy CK, Dong X, Bolcun-Filas E et al.