Detail Information of piRNA: piR-mmu-5734

Dataset	Accession	Reads	PubMed	Method	Tissue
4	N/A	N/A	16751776	small RNA	testis
11	GSM822760	1	22121019	Miwi IP	Testes, C57BL/6 Adult Miwi +/+
12	GSM822758	1	22121019	Miwi IP	Testes, C57BL/6 P14 Miwi +/+
14	GSM822761	1	22121019	Miwi IP	Testes, C57BL/6 Adult Miwi +/ADH
52	GSM610967	1	21602304	small RNA	Male germ cell, Round spermatids
58	GSM319954	1	18922463	Mili IP	10 dpp Dnmt3L KO testis
78	N/A	1	22020280	Mili IP	Miwi2+/-_2 E16.5 fetal testis
80	N/A	1	22020280	Mili IP	Miwi2-/-_2 E16.5 fetal testis
225	GSM1528807	6	26588211	small RNA	Adult testes Asb1 ao31(Het)
226	GSM1528808	3	26588211	small RNA	Adult testes Asb1 ao32(KO)
227	GSM1528809	3	26588211	small RNA	Adult testes Asb1 ao34(Het)
228	GSM1528810	4	26588211	small RNA	Adult testes Asb1 ao36(KO)
246	GSM1318059	3	25262350	small RNA	E16.5 whole testes
441	GSM1096582	3	23523368	small RNA	Wild Type 10.5 dpp testes
443	GSM1096583	17	23523368	small RNA	Wild Type 12.5 dpp testes
444	GSM1096600	7	23523368	oxidized small RNA	Wild Type 12.5 dpp testes
445	GSM1096584	6	23523368	small RNA	Wild Type 14.5 dpp testes
446	GSM1096601	12	23523368	oxidized small RNA	Wild Type 14.5 dpp testes
447	GSM1096585	5	23523368	small RNA	Wild Type 17.5 dpp testes
449	GSM1096586	8	23523368	small RNA	Wild Type 20.5 dpp testes
451	GSM1096587	25	23523368	small RNA	Wild Type 6 weeks dpp testes

13503 best hit(s) with 0 mismatch(es) in GRCm38

No.	Location	Gene	RepeatMaker
Location 1	5:128994306-128994336:-	Stx2 ENSMUST00000031378; Stx2 ENSMUST00000100680; Stx2 ENSMUST00000141492; Stx2 ENSMUST00000151712; Stx2 ENSMUST00000195906; Stx2 ENSMUST00000149877;
Hits not all shown! To search for more loci, you can Run Bowtie here or Blat in UCSC

PubMed	16751776	Journal	Nature. 2006 Jul 13;442(7099):199-202.
Title	A germline-specific class of small RNAs binds mammalian Piwi proteins
Authors	Girard A, Sachidanandam R, Hannon GJ, Carmell MA.

PubMed	22121019	Journal	Nature. 2011 Nov 27;480(7376):264-7.
Title	Miwi catalysis is required for piRNA amplification-independent LINE1 transposon silencing.
Authors	Reuter M, Berninger P, Chuma S, Shah H, Hosokawa M, Funaya C, Antony C, Sachidanandam R, Pillai RS.

PubMed	21602304	Journal	RNA. 2011 Jul;17(7):1191-203.
Title	piRNA profiling during specific stages of mouse spermatogenesis.
Authors	Gan H, Lin X, Zhang Z, Zhang W, Liao S, Wang L, Han C.

PubMed	18922463	Journal	Mol Cell. 2008 Sep 26;31(6):785-99.
Title	A piRNA pathway primed by individual transposons is linked to de novo DNA methylation in mice.
Authors	Aravin AA, Sachidanandam R, Bourc'his D, Schaefer C, Pezic D, Toth KF, Bestor T, Hannon GJ.

PubMed	22020280	Journal	Nature. 2011 Oct 23;480(7376):259-63.
Title	The endonuclease activity of Mili fuels piRNA amplification that silences LINE1 elements.
Authors	De Fazio S, Bartonicek N, Di Giacomo M, Abreu-Goodger C, Sankar A, Funaya C, Antony C, Moreira PN, Enright AJ, O'Carroll D.

PubMed	26588211	Journal	PLoS Genet. 2015 Nov 20;11(11):e1005652
Title	Conserved piRNA Expression from a Distinct Set of piRNA Cluster Loci in Eutherian Mammals
Authors	Chirn GW,Rahman R,Sytnikova YA,Matts JA,Zeng M,Gerlach D,Yu M,Berger B,Naramura M, Kile BT,Lau NC.

PubMed	25262350	Journal	Nucleic Acids Res. 2014 Oct 29;42(19):11903-11
Title	HSP90a plays an important role in piRNA biogenesis and retrotransposon repression in mouse.
Authors	Ichiyanagi T,Ichiyanagi K,Ogawa A,Kuramochi-Miyagawa S,Nakano T,Chuma S,Sasaki H,Udono H.

PubMed	23523368	Journal	Mol Cell. 2013 Apr 11;50(1):67-81. doi: 10.1016/j.molcel.2013.02.016.
Title	An ancient transcription factor initiates the burst of piRNA production during early meiosis in mouse testes
Authors	Li XZ, Roy CK, Dong X, Bolcun-Filas E et al.