Detail Information of piRNA: piR-mmu-5269

Dataset	Accession	Reads	PubMed	Method	Tissue
4	N/A	N/A	16751776	small RNA	testis
11	GSM822760	1	22121019	Miwi IP	Testes, C57BL/6 Adult Miwi +/+
12	GSM822758	1	22121019	Miwi IP	Testes, C57BL/6 P14 Miwi +/+
14	GSM822761	1	22121019	Miwi IP	Testes, C57BL/6 Adult Miwi +/ADH
15	GSM822762	1	22121019	Miwi IP	Testes, C57BL/6 Adult Miwi -/ADH
58	GSM319954	2	18922463	Mili IP	10 dpp Dnmt3L KO testis
61	GSM319957	2	18922463	Miwi2 IP	16.5 dpc testis
66	GSM509275	2	20439430	small RNA	MitoPLD+/+ E16.5 testis
69	GSM509278	3	20439430	small RNA	Miwi2-/- E16.5 testis
115	GSM958036	1	22902560	Mili IP	Fkbp6 -/-,P0,testis
116	GSM958037	1	22902560	Mili IP	Fkbp6 +/-,P10,testis
118	GSM958039	1	22902560	Mili IP	Tdrd1 +/-,E18,testis
119	GSM958040	1	22902560	Mili IP	Tdrd1 -/-,E18,testis
120	GSM958041	28	22902560	Miwi2 IP	Tdrd1 +/-,E18,testis
132	GSM475279	2	20022248	Miwi IP	adult testis
225	GSM1528807	1	26588211	small RNA	Adult testes Asb1 ao31(Het)
226	GSM1528808	1	26588211	small RNA	Adult testes Asb1 ao32(KO)
228	GSM1528810	2	26588211	small RNA	Adult testes Asb1 ao36(KO)
240	GSM433294	1	26115953	small RNA	18.5dpc hetero tdrd1 KO testes
345	GSM475279	2	20022248	Miwi-IP	testis
347	GSM475281	1	20022248	small RNA	testis
451	GSM1096587	1	23523368	small RNA	Wild Type 6 weeks dpp testes

658 best hit(s) with 0 mismatch(es) in GRCm38

No.	Location	Gene	RepeatMaker
Location 1	15:24311303-24311331:+	Gm49729 ENSMUST00000228438;	LTR ERVL MERVL_2A-int;
Hits not all shown! To search for more loci, you can Run Bowtie here or Blat in UCSC

PubMed	16751776	Journal	Nature. 2006 Jul 13;442(7099):199-202.
Title	A germline-specific class of small RNAs binds mammalian Piwi proteins
Authors	Girard A, Sachidanandam R, Hannon GJ, Carmell MA.

PubMed	22121019	Journal	Nature. 2011 Nov 27;480(7376):264-7.
Title	Miwi catalysis is required for piRNA amplification-independent LINE1 transposon silencing.
Authors	Reuter M, Berninger P, Chuma S, Shah H, Hosokawa M, Funaya C, Antony C, Sachidanandam R, Pillai RS.

PubMed	18922463	Journal	Mol Cell. 2008 Sep 26;31(6):785-99.
Title	A piRNA pathway primed by individual transposons is linked to de novo DNA methylation in mice.
Authors	Aravin AA, Sachidanandam R, Bourc'his D, Schaefer C, Pezic D, Toth KF, Bestor T, Hannon GJ.

PubMed	20439430	Journal	Genes Dev. 2010 May;24(9):887-92.
Title	MVH in piRNA processing and gene silencing of retrotransposons.
Authors	Kuramochi-Miyagawa S, Watanabe T, Gotoh K, Takamatsu K, Chuma S, Kojima-Kita K, Shiromoto Y, Asada N, Toyoda A, Fujiyama A, Totoki Y, Shibata T, Kimura T, Nakatsuji N, Noce T, Sasaki H, Nakano T.

PubMed	22902560	Journal	Mol Cell. 2012 Sep 28;47(6):970-9.
Title	A role for Fkbp6 and the chaperone machinery in piRNA amplification and transposon silencing.
Authors	Xiol J, Cora E, Koglgruber R, Chuma S, Subramanian S, Hosokawa M, Reuter M, Yang Z, Berninger P, Palencia A, Benes V, Penninger J, Sachidanandam R, Pillai RS.

PubMed	20022248	Journal	Curr Biol. 2009 Dec 29;19(24):2066-76.
Title	A broadly conserved pathway generates 3'UTR-directed primary piRNAs.
Authors	Robine N, Lau NC, Balla S, Jin Z, Okamura K, Kuramochi-Miyagawa S, Blower MD, Lai EC.

PubMed	26588211	Journal	PLoS Genet. 2015 Nov 20;11(11):e1005652
Title	Conserved piRNA Expression from a Distinct Set of piRNA Cluster Loci in Eutherian Mammals
Authors	Chirn GW,Rahman R,Sytnikova YA,Matts JA,Zeng M,Gerlach D,Yu M,Berger B,Naramura M, Kile BT,Lau NC.

PubMed	26115953	Journal	Genes Dev. 2015 Jul 1; 29(13): 1403?415
Title	RNF17 blocks promiscuous activity of PIWI proteins in mouse testes
Authors	Wasik KA, Tam OH, Knott SR, Falciatori I, Hammell M, Vagin VV, Hannon GJ

PubMed	23523368	Journal	Mol Cell. 2013 Apr 11;50(1):67-81. doi: 10.1016/j.molcel.2013.02.016.
Title	An ancient transcription factor initiates the burst of piRNA production during early meiosis in mouse testes
Authors	Li XZ, Roy CK, Dong X, Bolcun-Filas E et al.